XSEDE Software Discovery
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| Ciliates Popupjb Cloud Image Indiana U Current Iteration of JBrowse image end of april 2019Related Jetstream resources:
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| REU Project Cloud Image Indiana U Friday 8 March 2019Related Jetstream resources:
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| EPIC Modeling and Simulations Cloud Image Indiana U Explicit Planetary Isentropic-Coordinate (EPIC) Atmospheric Model Based on Ubuntu 14.04.3 Development Patched up to date as of 1/2/17 Base Ubuntu 14.04.3 + Xfce + Xfce-goodies, firefox, icon sets and themes EPIC 3v9Related Jetstream resources:
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| EDGE_v1 Cloud Image Indiana U EDGE bioinformatics websiteRelated Jetstream resources:
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| Photoscan_Centos7 Cloud Image Indiana U Centos7 GUI development with Agisoft's photoscan preinstalled and configuredRelated Jetstream resources:
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| bcbio-nextgen Cloud Image Indiana U Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis. You write a high level configuration file specifying your inputs and analysis parameters. This input drives a parallel run that handles distributed execution, idempotent processing restarts and safe transactional steps. bcbio provides a shared community resource that handles the data processing component of sequencing analysis, providing researchers with more time to focus on the downstream biology.Related Jetstream resources:
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| VJC_R341_Bioc3_6_HSOS_admDec28 Cloud Image Indiana U updates Bioc packages and includes HSOS infrastructure of Dec 2017Related Jetstream resources:
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| pna-agent-tacc Cloud Image Indiana U Anaconda python 3.6, OpenMMRelated Jetstream resources:
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| VJC_R3_4_1_BiocHSOS_HDFS v_1_1 Cloud Image Indiana U Adding infrastructure to support running hdf server.Related Jetstream resources:
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| VJC_R3.4.1_BiocHSOS v.1.1 Cloud Image Indiana U Includes sufficient infrastructure to run rhdf5client + HSOSRelated Jetstream resources:
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| VJC_R3.4.1_Bioconductor Cloud Image Indiana U Includes sufficient infrastructure to run rhdf5clientRelated Jetstream resources:
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| Globus Toolkit GridFTP Service Vendor Software Globus Toolkit GridFTP Services
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| Information Services Vendor Software XSEDE XSEDE Information Services (IS)
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| Kerberos Vendor Software Kerberos is a network authentication protocol. It is designed to provide strong authentication for client/server applications by using secret-key cryptography. A free implementation of this protocol is available from the Massachusetts Institute of Technology. Kerberos is available in many commercial products as well.
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| MyProxy Vendor Software NCSA MyProxy is open source software for managing X.509 Public Key Infrastructure (PKI) security credentials (certificates and private keys). MyProxy combines an online credential repository with an online certificate authority to allow users to securely obtain credentials when and where needed. Users run myproxy-logon to authenticate and obtain credentials, including trusted CA certificates and Certificate Revocation Lists (CRLs). Storing credentials in a MyProxy repository allows users to easily obtain RFC 3820 proxy credentials, without worrying about managing private key and certificate files. They can use MyProxy to delegate credentials to services acting on their behalf (like a grid portal) by storing credentials in the MyProxy repository and sending the MyProxy passphrase to the service. They can also use MyProxy to renew their credentials, so, for example, long-running jobs don't fail because of expired credentials. A professionally managed MyProxy server can provide a more secure storage location for private keys than typical end-user systems. MyProxy can be configured to encrypt all private keys in the repository with user-chosen passphrases, with server-enforced policies for passphrase quality. By using a proxy credential delegation protocol, MyProxy allows users to obtain proxy credentials when needed without ever transferring private keys over the network. For users that don't already have PKI credentials, the MyProxy Certificate Authority (CA) provides a convenient method for obtaining them. The MyProxy CA issues short-lived session credentials to authenticated users. The repository and CA functionality can be combined in one service or can be used separately. MyProxy provides a set of flexible authentication and authorization mechanisms for controlling access to credentials. Server-wide policies allow the MyProxy administrator to control how credentials may be used. Per-credential policies provide additional controls for credential owners. MyProxy supports multiple authentication mechanisms, including passphrase, certificate, Kerberos, OAuth, SAML, OpenID, Pubcookie, VOMS, PAM, LDAP, RADIUS, SASL, Moonshot, and One Time Passwords (OTP).
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| Amber Vendor Software Molecular mechanical force fields for the simulation of biomolecules and package of molecular simulation programs
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| Globus Sharing Vendor Software Globus Data Sharing Service
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| Globus Auth ID Explorer Vendor Software This is a Web app that allows anyone to explore their Globus identity information. It is intended to be deployed on a public Web server so that one can connect to it using a Web browser, login, see the data that Globus's Auth API provides to the app, and logout. The purpose of the app is to show Web developers what the identity information returned from the Auth API looks like so that they can then write their own apps that use the Auth API.
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| Cornell Virtual Workshop Vendor Software The Cornell Virtual WorkshopSM learning platform is designed to enhance the computational science skills of researchers, accelerate the adoption of new and emerging technologies, and broaden the participation of underrepresented groups in science and engineering.
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| Singularity Container Registry Vendor Software Network service deployment of the Singularity Container Registry
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| NVIDIA NGC Catalog Vendor Software Deploy performance-optimized AI/HPC software containers, pre-trained AI models, and Jupyter Notebooks that accelerate AI developments and HPC workloads on any GPU-powered on-prem, cloud, and edge systems.
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| Grid Community Toolkit Vendor Software The Grid Community Toolkit (GCT) is an open-source fork by the Grid Community Forum of the venerable Globus Toolkit created by the Globus Alliance. The GCT was created in response to the end-of-support of the Globus Toolkit in January 2018.
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| UIUC Research Information Technology (IT) Portal Vendor Software Portal for finding University of Illinois campus wide technology resources & training
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| COmanage Vendor Software Most academic and research success stories involve a considerable amount of collaboration. COmanage helps you streamline and manage your identity-oriented requirements so your faculty can concentrate on research, your students can concentrate on learning, and your staff can concentrate on getting things done.
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| Globus Connect Personal Vendor Software Creates a Globus endpoint on your laptop or other personal computer and allows you to transfer and share files, even if you don't have administrative privileges on your machine. Globus Connect Personal is available for Mac OS X, Windows, and Linux operating systems.
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