ACCESS Software Discovery
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| jdk Executable Software UD jdk Version 15.0.1 |
| Centos 7 Devel with Anaconda Cloud Image Indiana U Centos 7 (7.8) Development GUI with Anaconda installed into /opt/anaconda2 Installation size ~ 9.0GB - Requires an m1.small or largerRelated Jetstream resources:
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| Matlab 2021a - Ubuntu 20.04 Cloud Image Indiana U Matlab R2021a install - requires an m1.medium or larger Based on Ubuntu 20.04 LTS Development + GUI support + Docker Installation size ~ 31GBRelated Jetstream resources:
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| Ubuntu 20.4 with Spark Cloud Image Indiana U Ubuntu 20.04 with Anaconda3, Jupyter-notebook, Java11.0.13, Apache Spark 3.2, and pyspark. The Python environment includes matplotlib, pyspark, pandas, etc.Related Jetstream resources:
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| RETIRED - Jupyter Notebook Cloud Image Indiana U Jupyter Notebook is an open-source web application that allows you to create and share documents that contain live code, equations, visualizations and narrative text. Uses include: data cleaning and transformation, numerical simulation, statistical modeling, data visualization, machine learning, and much more.Related Jetstream resources:
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| I520-B544-Lab Cloud Image Indiana U Designed for use with IU SICE B544/I520 Security for Networked Systems (previously https://use.jetstream-cloud.org/application/images/754 by DongInn Kim and Dr. Raquel Hill)Related Jetstream resources:
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| Murdock-PIS- BLAST and Beyond Cloud Image Indiana U BLAST+, Centrifuge and SRATools pre loaded and moved to /usr/lib/Related Jetstream resources:
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| EDGE_covid19 Cloud Image Indiana U Base image for edge-covid19 siteRelated Jetstream resources:
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| A-State Phylogenetics Cloud Image Indiana U VM designed for BIO 404V/504V - Phylogenetics and Systematics at Arkansas State University.Related Jetstream resources:
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| RETIRED - WQ-MAKER with Genemark and BLAT Cloud Image Indiana U BLAT and Genemark installed in WQ-MAKER image This image was created by the team at CyVerse and is likely the best MAKER image on Jetstream to use and customize from. This version of MAKER should be multi-node, work queue based, so you should be able to use smaller flavor sizes but more of them. Please refer to the docs linked below. Docs: https://cyverse-wq-maker-tutorial.readthedocs-hosted.com/en/latest/index.htmlRelated Jetstream resources:
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| QIIME2 toolkit Cloud Image Indiana U Anvi’o is an open-source, community-driven analysis and visualization platform for ‘omics data. Documentation- http://merenlab.org/software/anvio/ This image was made by National Center for Genome Analysis Support (NCGAS)- ncgas.org. Please see our blog for documentation to use this image. If you have any questions regarding this image email us at help@ncgas.orgRelated Jetstream resources:
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| NCHS nanopore analysis tools Cloud Image Indiana U flye quast medaka filtlong racon also updated cmake to v3.2, installed python3Related Jetstream resources:
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| PonyLinux Cloud Image Indiana U This image comes packed with a fun game for learning your way around the command line in Unix! Using ponysay and bash, this game walks you through the basics of command syntax, navigation, and dealing with files. If you want logins to work and full details, make sure you add this as a deployment script url: https://raw.githubusercontent.com/NCGAS/PonyLinux/master/Developer_utilities/jetstream_boot.shRelated Jetstream resources:
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| PonyLinux Cloud Image Indiana U A fun game-based way to learn your way around the command line in Unix.Related Jetstream resources:
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| NLP.crawl w R.Apache.Jupyter Cloud Image Indiana U Ubuntu 18.04 with Python 3 and R tools installed for natural language processing (NLP) and web-crawling. PyLucene and Apache NLP tools and Jupyter notebooks are installed, and R-Studio Server is configured. Python packages: NLTK, Spacy, Sci-kit learn, gensim, BeautifulSoup, scrapy, selenium. R packages: dplyr, tidyverse, gsl, topicmodels.Related Jetstream resources:
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| Bioacoustic Data Collection Cloud Image Indiana U Workflow for collecting and visualizing data from a bioacoustic recording device to full visualization of R spectrograms in a Drupal website. Interacts with Frog Call Analysis image to get predictions from Random Forest ClassifierRelated Jetstream resources:
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| Bioacoustic Data Collection Cloud Image Indiana U HALF of workflow for collecting and visualizing data from a bioacoustic recording device to full visualization of R spectrograms in a Drupal website. *****Intermittent image to check for security holes.Related Jetstream resources:
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| Frog Calls 2020 Analysis Image Cloud Image Indiana U This image is the base image for the Frog Call Identification Project in the 2020 Jetstream REU program. It has R, jupyter, sklearn, keras, and vsftpd installed.Related Jetstream resources:
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| Ubuntu and cmatrix Cloud Image Indiana U type "cmatrix" into the terminal for some fun :)Related Jetstream resources:
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| Ubuntu 18_04 for SOMOSPIE V1_2 Cloud Image Indiana U Updated and Upgraded Version of Ubuntu 18_04 for SOMOSPIERelated Jetstream resources:
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| dspace image Cloud Image Indiana U dspace image is based on BASIC NO GUI Image. CentOS 7. Based on featured Centos 7 development GUI imageRelated Jetstream resources:
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| Software Eng Python3 Postgres Cloud Image Indiana U Includes Ubuntu 18.x updated on 9/25/2019, python3, pip3, virtualenv and postgresql.Related Jetstream resources:
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| first Cloud Image Indiana U installing RRelated Jetstream resources:
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| agaveworkshop20180806 Cloud Image Indiana U Docker and Singularity VM for Agave Container workshop at the University of Hawaii.Related Jetstream resources:
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| ubu16_R35_glioBulk Cloud Image Indiana U Bioconductor sufficient for harvesting new SRA compendiumRelated Jetstream resources:
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