ACCESS Software Discovery
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| Tims VM 25 March Cloud Image Indiana U Backup Image for 25 MarchRelated Jetstream resources:
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| RDC MySQL Cloud Image Indiana U RDC MySQL VM. NO GUI Image. CentOS 7. Based on featured Centos 7 development GUI image.Related Jetstream resources:
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| agavewrkshp20180806 Cloud Image Indiana U This is a image with Docker and Singularity that works with the UH HPC for use in a Agave and Containers workshop hosted at UH.Related Jetstream resources:
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| MEGAN Community Edition v6 Cloud Image Indiana U MEGAN ("MEtaGenome ANalyzer") is a computer program that allows optimized analysis of large metagenomic datasets. For more information https://ab.inf.uni-tuebingen.de/software/megan6 This instance hosts the MEGAN v6 community edition softwareRelated Jetstream resources:
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| ariella_worker_6 Cloud Image Indiana U worker for simulationsRelated Jetstream resources:
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| VirusFriends Cloud Image Indiana U Version 1.0 of the Virus Friends imageRelated Jetstream resources:
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| SearchSRA Base Image Cloud Image Indiana U A base installation of the tools to download sequences and search the Sequence Read Archive using either bowtie2 or RAPsearch2Related Jetstream resources:
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| Globus Connect Vendor Software Globus GridFTP service bundle for Globus Transfer
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| Gaussian 16 Vendor Software Quantum Chemistry and DFT software suite
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| JIRA Vendor Software Project bug, issue, and task planning, tracking, releasing, and reporting.
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| OpenSSH Vendor Software OpenSSH is the premier connectivity tool for remote login with the SSH protocol. It encrypts all traffic to eliminate eavesdropping, connection hijacking, and other attacks. In addition, OpenSSH provides a large suite of secure tunneling capabilities, several authentication methods, and sophisticated configuration options.
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| moodle Vendor Software Open source platform for building custom education solutions.
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| CILogon Vendor Software NCSA CILogon is an InCommon service provider, part of the XSEDE architecture, that provides a proxy service from SAML to OIDC and X.509, allowing XSEDE users to log on with their campus identities to access X.509-based services (like GridFTP) and OIDC-based services (like Globus).
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| ATutor Vendor Software ATutor is an Open Source Web-based Learning Management System (LMS) used to develop and deliver online courses. Administrators can install or update ATutor in minutes, develop custom themes to give ATutor a new look, and easily extend its functionality with feature modules. Educators can quickly assemble, package, and redistribute Web-based instructional content, easily import prepackaged content, and conduct their courses online. Students learn in an accessible, adaptive, social learning environment.
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| Open XDMod Vendor Software Open XDMoD is an open source tool to facilitate the management of high performance computing resources. It is widely deployed at academic, industrial and governmental HPC centers. Open XDMoD’s management capabilities include monitoring standard metrics such as utilization, providing quality of service metrics designed to proactively identify underperforming system hardware and software, and reporting job level performance data for every job running on the HPC system without the need to recompile applications. Open XDMoD is designed to meet the following objectives: (1) provide the user community with a tool to more effectively and efficiently use their allocations and optimize their use of HPC resources, (2) provide operational staff with the ability to monitor, diagnose, and tune system performance as well as measure the performance of all applications running on their system, (3) provide software developers with the ability to easily obtain detailed analysis of application performance to aid in optimizing code performance, (4) provide stakeholders with a diagnostic tool to facilitate HPC planning and analysis, and (5) provide metrics to help measure scientific impact. In addition, analyses of the operational characteristics of the HPC environment can be carried out at different levels of granularity, including job, user, or on a system-wide basis.
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| Amazon Elastic Container Registry Vendor Software Amazon Elastic Container Registry (ECR) is a fully-managed Docker container registry that makes it easy for developers to store, manage, and deploy Docker container images. Amazon ECR is integrated with Amazon Elastic Container Service (ECS), simplifying your development to production workflow. Amazon ECR eliminates the need to operate your own container repositories or worry about scaling the underlying infrastructure. Amazon ECR hosts your images in a highly available and scalable architecture, allowing you to reliably deploy containers for your applications. Integration with AWS Identity and Access Management (IAM) provides resource-level control of each repository. With Amazon ECR, there are no upfront fees or commitments. You pay only for the amount of data you store in your repositories and data transferred to the Internet.
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| Grid Community Toolkit GridFTP Service Vendor Software GridFTP is a high-performance, secure, reliable data transfer protocol optimized for high-bandwidth wide-area networks. The GridFTP protocol is based on FTP, the highly-popular Internet file transfer protocol. We have selected a set of protocol features and extensions defined already in IETF RFCs and added a few additional features to meet requirements from current data grid projects.
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| Cosserat Rods | Elastica Vendor Software Elastica is a free and open-source software project for the simulation of assemblies of slender, one-dimensional bodies using Cosserat rod theory.
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| GitHub development platform Vendor Software Millions of developers and companies build, ship, and maintain their software on GitHub—the largest and most advanced development platform in the world.
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| Illinois Digital Environment for Access to Learning and Scholarship (IDEALS) Vendor Software IDEALS, the Illinois Digital Environment for Access to Learning and Scholarship, collects, disseminates, and provides persistent and reliable access to the research and scholarship of faculty, staff, and students at the University of Illinois at Urbana-Champaign. Faculty, staff, and graduate students can deposit their research and scholarship—unpublished and, in many cases, published—directly into IDEALS. Departments can use IDEALS to distribute their working papers, technical reports, or other research material. IDEALS also includes all electronic theses and dissertations deposited from Fall 2010 onward.
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| RabbitMQ Vendor Software RabbitMQ messaging broker
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| Inca Vendor Software Periodic, automated, user-level cyberinfrastructure testing
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| ACCESS allocation usage lookup command line client Vendor Software ACCESS allocation usage lookup command line client for use on resource provider resources
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| Service Provider Batch Processing Services Online Service Several XSEDE Service Providers (SPs) offer batch processing (aka, "job queue") services. A batch processing service allows individuals with an allocation on the resource to submit and manage computational jobs to one or more queues. A job typically includes a specification of the application or script to be run, input files, and the application or scripts processing requirements (number of compute cores, working memory, working storage, etc.). The jobs in each queue are scheduled according to a policy unique to the queue and are executed in the manner dictated by the scheduler. The job queue interface allows status queries and notification of job completion. Most job queues offer command-line interfaces (CLI) and require remote terminal (command shell) login to an interactive node on the system where the CLI is available. |
| Cornell Virtual Workshop Online Service The Cornell Virtual WorkshopSM learning platform is designed to enhance the computational science skills of researchers, accelerate the adoption of new and emerging technologies, and broaden the participation of underrepresented groups in science and engineering.
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ACCESS is an advanced computing and data resource supported by the
National Science Foundation
and made possible through these lead institutions and their partners:
Carnegie Mellon University,
University of Colorado Boulder,
University of Illinois at Urbana-Champaign, and
State University of New York at Buffalo .
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