Comprehensive Software Search

Viewing: 201 - 225 of 1902.

bbftp 3.2.1

Provider: San Diego Supercomputer Center (SDSC)
Resource: comet.sdsc.xsede.org
Type: Executable Software

bbftp 3.2.1

Provider: San Diego Supercomputer Center (SDSC)
Resource: comet-gpu.sdsc.xsede.org
Type: Executable Software

bcbio-nextgen

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis. You write a high level configuration file specifying your inputs and analysis parameters. This input drives a parallel run that handles distributed execution, idempotent processing restarts and safe transactional steps. bcbio provides a shared community resource that handles the data processing component of sequencing analysis, providing researchers with more time to focus on the downstream biology.

Provider: Indiana University (IU) Pervasive Technology Institute (PTI)
Type: Cloud Image

bcftools 0.1.19

Utilities for variant calling and manipulating VCFs and BCFs.

Provider: Pittsburgh Supercomputing Center (PSC)
Resource: bridges.psc.xsede.org
Type: Executable Software

bcftools 1.3

Provider: San Diego Supercomputer Center (SDSC)
Resource: comet-gpu.sdsc.xsede.org
Type: Executable Software

bcftools 1.3

Provider: San Diego Supercomputer Center (SDSC)
Resource: comet.sdsc.xsede.org
Type: Executable Software

bcftools 1.3.1

Utilities for variant calling and manipulating VCFs and BCFs.

Provider: Pittsburgh Supercomputing Center (PSC)
Resource: bridges.psc.xsede.org
Type: Executable Software

beagle 2.1

beagle

Provider: San Diego Supercomputer Center (SDSC)
Resource: comet.sdsc.xsede.org
Type: Executable Software

beagle 2.1

beagle

Provider: San Diego Supercomputer Center (SDSC)
Resource: comet-gpu.sdsc.xsede.org
Type: Executable Software

beast 1.8.0

beast

Provider: San Diego Supercomputer Center (SDSC)
Resource: comet-gpu.sdsc.xsede.org
Type: Executable Software

beast 1.8.0

beast

Provider: San Diego Supercomputer Center (SDSC)
Resource: comet.sdsc.xsede.org
Type: Executable Software

beast 1.8.1

beast

Provider: San Diego Supercomputer Center (SDSC)
Resource: comet-gpu.sdsc.xsede.org
Type: Executable Software

beast 1.8.1

beast

Provider: San Diego Supercomputer Center (SDSC)
Resource: comet.sdsc.xsede.org
Type: Executable Software

beast 1.8.2

beast

Provider: San Diego Supercomputer Center (SDSC)
Resource: comet.sdsc.xsede.org
Type: Executable Software

beast 1.8.2

beast

Provider: San Diego Supercomputer Center (SDSC)
Resource: comet-gpu.sdsc.xsede.org
Type: Executable Software

beast2 2.1.3

beast2

Provider: San Diego Supercomputer Center (SDSC)
Resource: comet-gpu.sdsc.xsede.org
Type: Executable Software

beast2 2.1.3

beast2

Provider: San Diego Supercomputer Center (SDSC)
Resource: comet.sdsc.xsede.org
Type: Executable Software

bedops 2.4.35

BEDOPS is an open-source command-line toolkit that performs highly efficient and scalable Boolean and other set operations, statistical calculations, archiving, conversion and other management of genomic data of arbitrary scale. Tasks can be easily split by chromosome for distributing whole-genome analyses across a computational cluster.

Provider: Pittsburgh Supercomputing Center (PSC)
Resource: bridges.psc.xsede.org
Type: Executable Software

bedtools 2.25.0

Provider: San Diego Supercomputer Center (SDSC)
Resource: comet-gpu.sdsc.xsede.org
Type: Executable Software

bedtools 2.25.0

bedtools: a flexible suite of utilities for comparing genomic features

Provider: Texas Advanced Computing Center (TACC)
Resource: wrangler.tacc.xsede.org
Type: Executable Software

bedtools 2.26.0

A powerful toolset for genome arithmetic

Provider: Texas Advanced Computing Center (TACC)
Resource: stampede2.tacc.xsede.org
Type: Executable Software



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