Research Resource Discovery

Viewing: 126 - 150 of 1867.

beast2 2.5.2

beast2

Affiliation: XSEDE
Provider: San Diego Supercomputer Center (SDSC)
Type: Executable Software
Resource: comet-gpu.sdsc.xsede.org

beast2 2.5.2

beast2

Affiliation: XSEDE
Provider: San Diego Supercomputer Center (SDSC)
Type: Executable Software
Resource: comet.sdsc.xsede.org

bedops 2.4.19

Affiliation: XSEDE
Provider: Pittsburgh Supercomputing Center (PSC)
Type: Executable Software
Resource: bridges.psc.xsede.org

bedops 2.4.35

BEDOPS is an open-source command-line toolkit that performs highly efficient and scalable Boolean and other set operations, statistical calculations, archiving, conversion and other management of genomic data of arbitrary scale. Tasks can be easily split by chromosome for distributing whole-genome analyses across a computational cluster.

Affiliation: XSEDE
Provider: Pittsburgh Supercomputing Center (PSC)
Type: Executable Software
Resource: bridges.psc.xsede.org

bedtools 2.25.0

Affiliation: XSEDE
Provider: Pittsburgh Supercomputing Center (PSC)
Type: Executable Software
Resource: bridges.psc.xsede.org

bedtools 2.27.1

Affiliation: XSEDE
Provider: San Diego Supercomputer Center (SDSC)
Type: Executable Software
Resource: comet.sdsc.xsede.org

bedtools 2.27.1

Affiliation: XSEDE
Provider: San Diego Supercomputer Center (SDSC)
Type: Executable Software
Resource: comet-gpu.sdsc.xsede.org

BerkeleyGW 1.2.0

Affiliation: XSEDE
Provider: Pittsburgh Supercomputing Center (PSC)
Type: Executable Software
Resource: bridges.psc.xsede.org

betaPic_39um v.0.5

findr+klipRreduce with betaPic 3.9 um fake planets

Affiliation: XSEDE
Provider: Indiana University (IU) Pervasive Technology Institute (PTI)
Type: Cloud Image

betaPic_39um_w_fake_planets v.0.4

Has fake planets injected at /findr/Data/fp*

Affiliation: XSEDE
Provider: Indiana University (IU) Pervasive Technology Institute (PTI)
Type: Cloud Image

bggn213_ucsd

Based on Ubuntu 18_04 with: R 3.4.4 RStudio server 1.2.1335 NCBI blast 2.6.0 2.6.0

Affiliation: XSEDE
Provider: Indiana University (IU) Pervasive Technology Institute (PTI)
Type: Cloud Image

bgRAMOSE - Genomics Software

This image provides a platform for Brendel Group RAMOSE workflows for computational genomics. Our RAMOSE philosophy and promise: we take every effort to design our workflows such that a user can generate reproducible, accurate, and meaningful results; our software is open (source), scalable, and easy to use (so that a typical genome laboratory team should be able to run it). And, of course, our software should be ramose (having many branches; see also the ramosa pathway in grass genomics ...) - it is yours to use, modify, improve, enhance, ...

Affiliation: XSEDE
Provider: Indiana University (IU) Pervasive Technology Institute (PTI)
Type: Cloud Image

bgRAMOSE - Genomics Software

This image provides a platform for Brendel Group RAMOSE workflows for computational genomics. Our RAMOSE philosophy and promise: we take every effort to design our workflows such that a user can generate reproducible, accurate, and meaningful results; our software is open (source), scalable, and easy to use (so that a typical genome laboratory team should be able to run it). And, of course, our software should be ramose (having many branches; see also the ramosa pathway in grass genomics ...) - it is yours to use, modify, improve, enhance, ...

Affiliation: XSEDE
Provider: Indiana University (IU) Pervasive Technology Institute (PTI)
Type: Cloud Image

Bioacoustic Data Collection

Workflow for collecting and visualizing data from a bioacoustic recording device to full visualization of R spectrograms in a Drupal website. Interacts with Frog Call Analysis image to get predictions from Random Forest Classifier

Affiliation: XSEDE
Provider: Indiana University (IU) Pervasive Technology Institute (PTI)
Type: Cloud Image

Bioacoustic Data Collection

Workflow for collecting and visualizing data from a bioacoustic recording device to full visualization of R spectrograms in a Drupal website.

Affiliation: XSEDE
Provider: Indiana University (IU) Pervasive Technology Institute (PTI)
Type: Cloud Image

Bioacoustic Data Collection

HALF of workflow for collecting and visualizing data from a bioacoustic recording device to full visualization of R spectrograms in a Drupal website. *****Intermittent image to check for security holes.

Affiliation: XSEDE
Provider: Indiana University (IU) Pervasive Technology Institute (PTI)
Type: Cloud Image

Bioacoustic Data Collection

Workflow for collecting and visualizing data from a bioacoustic recording device to full visualization of R spectrograms in a Drupal website. Interacts with Frog Call Analysis image to get predictions from Random Forest Classifier

Affiliation: XSEDE
Provider: Indiana University (IU) Pervasive Technology Institute (PTI)
Type: Cloud Image

Bioacoustic Data Collection

Workflow for collecting and visualizing data from a bioacoustic recording device to full visualization of R spectrograms in a Drupal website. Interacts with Frog Call Analysis image to get predictions from Random Forest Classifier

Affiliation: XSEDE
Provider: Indiana University (IU) Pervasive Technology Institute (PTI)
Type: Cloud Image

Bioc3.10_docker_singularity

R+ Bioconductor plus docker and singularity

Affiliation: XSEDE
Provider: Indiana University (IU) Pervasive Technology Institute (PTI)
Type: Cloud Image

Bioc_37_ubu16

Bioconductor resources for version 3.7, R 3.5 in Ubunto

Affiliation: XSEDE
Provider: Indiana University (IU) Pervasive Technology Institute (PTI)
Type: Cloud Image

biocBBS_2019aug7_ub1804

Includes CERN ROOT in /usr/local for xps. Sufficient infrastructure to provision R 3.6 to build/check 1625 Bioc software packages. The image of R for building these packages consumes about 80GB so must be built on an attached volume. The whole build process requires temp space on the attached volume. At least 300GB will be required.

Affiliation: XSEDE
Provider: Indiana University (IU) Pervasive Technology Institute (PTI)
Type: Cloud Image

biocontainers 0.1.0

Biocontainers accessible through module files

Affiliation: XSEDE
Provider: Texas Advanced Computing Center (TACC)
Type: Executable Software
Resource: stampede2.tacc.xsede.org

BioEnergy Portal UTSA

Made Changes the shell script that fetches data from TACC Corral Storage to Jetstream

Affiliation: XSEDE
Provider: Indiana University (IU) Pervasive Technology Institute (PTI)
Type: Cloud Image

bioformats2raw 0.2.4

Affiliation: XSEDE
Provider: Pittsburgh Supercomputing Center (PSC)
Type: Executable Software
Resource: bridges.psc.xsede.org

bioformats 6.0.1

Affiliation: XSEDE
Provider: Pittsburgh Supercomputing Center (PSC)
Type: Executable Software
Resource: bridges.psc.xsede.org



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