Research Resource Discovery

Viewing: 76 - 100 of 150.

XSEDE Resource Allocation Service (XRAS)

The XSEDE Resource Allocation Service (XRAS) is the Web and database service that supports the XSEDE allocation process. It includes a database for storing information about allocation opportunities, allocation proposals, proposal reviews, allocation process results; and Web interfaces for administering allocation processes and for reviewing allocation proposals. It uses the XSEDE User Portal (XUP) as the Web interface for entering allocation proposals.

Affiliation: XSEDE
Provider: The Extreme Science and Engineering Discovery Environment (XSEDE)
Type: Network Service

anaconda 4.0

Open data science platform, includes popular Python, R and SCALA packages

Affiliation: XSEDE
Provider: Pittsburgh Supercomputing Center (PSC)
Type: Executable Software
Resource: bridges.psc.xsede.org

basemap 1.1.0

Plot 2D data on maps in Python

Affiliation: XSEDE
Provider: Texas Advanced Computing Center (TACC)
Type: Executable Software
Resource: stampede2.tacc.xsede.org

basemap 1.2.1

Plot 2D data on maps in Python

Affiliation: XSEDE
Provider: Texas Advanced Computing Center (TACC)
Type: Executable Software
Resource: stampede2.tacc.xsede.org

bedops 2.4.35

BEDOPS is an open-source command-line toolkit that performs highly efficient and scalable Boolean and other set operations, statistical calculations, archiving, conversion and other management of genomic data of arbitrary scale. Tasks can be easily split by chromosome for distributing whole-genome analyses across a computational cluster.

Affiliation: XSEDE
Provider: Pittsburgh Supercomputing Center (PSC)
Type: Executable Software
Resource: bridges.psc.xsede.org

betaPic_39um_w_fake_planets v.0.4

Has fake planets injected at /findr/Data/fp*

Affiliation: XSEDE
Provider: Indiana University (IU) Pervasive Technology Institute (PTI)
Type: Cloud Image

BioEnergy Portal UTSA

Made Changes the shell script that fetches data from TACC Corral Storage to Jetstream

Affiliation: XSEDE
Provider: Indiana University (IU) Pervasive Technology Institute (PTI)
Type: Cloud Image

CAFE Phylogenetics Tutorial

CAFE (Computational Analysis of gene Family Evolution) is an application that analyzes changes in gene family size in a way that accounts for phylogenetic history and provides a statistical foundation for evolutionary inferences. This image includes a tutorial for a full CAFE pipeline including the applications CAFE, BLAST, MCL and r8s.

Affiliation: XSEDE
Provider: Indiana University (IU) Pervasive Technology Institute (PTI)
Type: Cloud Image

deeptools 3.1.0

User-friendly tools for exploring deep-sequencing data

Affiliation: XSEDE
Provider: Texas Advanced Computing Center (TACC)
Type: Executable Software
Resource: stampede2.tacc.xsede.org

fastqc 0.11.5

A quality control tool for high throughput sequence data

Affiliation: XSEDE
Provider: Texas Advanced Computing Center (TACC)
Type: Executable Software
Resource: stampede2.tacc.xsede.org

Frog Calls 2020 Analysis Image

This image is the base image for the Frog Call Identification Project in the 2020 Jetstream REU program. It has R, jupyter, sklearn, keras, and vsftpd installed.

Affiliation: XSEDE
Provider: Indiana University (IU) Pervasive Technology Institute (PTI)
Type: Cloud Image

Galaxy Standalone

Galaxy Standalone - based on Ubuntu 14.04.4 LTS This is a standalone Galaxy server that comes preconfigured with hundreds of tools and commonly used reference datasets: just launch and use. ***It is necessary to launch an instance type of Large or larger.*** See https://galaxyproject.org/cloud/jetstream/ for information about this image and using it.

Affiliation: XSEDE
Provider: Indiana University (IU) Pervasive Technology Institute (PTI)
Type: Cloud Image

gatk 3.5

A Genome Analysis Toolkit for variant discovery and genotyping.

Affiliation: XSEDE
Provider: Pittsburgh Supercomputing Center (PSC)
Type: Executable Software
Resource: bridges.psc.xsede.org

gatk 3.6

A Genome Analysis Toolkit for variant discovery and genotyping.

Affiliation: XSEDE
Provider: Pittsburgh Supercomputing Center (PSC)
Type: Executable Software
Resource: bridges.psc.xsede.org

gatk 3.7

A Genome Analysis Toolkit for variant discovery and genotyping.

Affiliation: XSEDE
Provider: Pittsburgh Supercomputing Center (PSC)
Type: Executable Software
Resource: bridges.psc.xsede.org

gatk 3.8

A Genome Analysis Toolkit for variant discovery and genotyping.

Affiliation: XSEDE
Provider: Pittsburgh Supercomputing Center (PSC)
Type: Executable Software
Resource: bridges.psc.xsede.org

gatk 4-beta.5

A Genome Analysis Toolkit for variant discovery and genotyping.

Affiliation: XSEDE
Provider: Pittsburgh Supercomputing Center (PSC)
Type: Executable Software
Resource: bridges.psc.xsede.org

gatk 4.0.1.2

A Genome Analysis Toolkit for variant discovery and genotyping.

Affiliation: XSEDE
Provider: Pittsburgh Supercomputing Center (PSC)
Type: Executable Software
Resource: bridges.psc.xsede.org

gatk 4.1.0.0

A Genome Analysis Toolkit for variant discovery and genotyping.

Affiliation: XSEDE
Provider: Pittsburgh Supercomputing Center (PSC)
Type: Executable Software
Resource: bridges.psc.xsede.org

gdal 2.2.1

Translator library for raster and vector geospatial data formats

Affiliation: XSEDE
Provider: Pittsburgh Supercomputing Center (PSC)
Type: Executable Software
Resource: bridges.psc.xsede.org

GenomeAnalysisTK 3.5

Affiliation: XSEDE
Provider: San Diego Supercomputer Center (SDSC)
Type: Executable Software
Resource: comet-gpu.sdsc.xsede.org

GenomeAnalysisTK 3.5

Affiliation: XSEDE
Provider: San Diego Supercomputer Center (SDSC)
Type: Executable Software
Resource: comet.sdsc.xsede.org

GenomeAnalysisTK 4.0.11.0

Affiliation: XSEDE
Provider: San Diego Supercomputer Center (SDSC)
Type: Executable Software
Resource: comet-gpu.sdsc.xsede.org

GenomeAnalysisTK 4.0.11.0

Affiliation: XSEDE
Provider: San Diego Supercomputer Center (SDSC)
Type: Executable Software
Resource: comet.sdsc.xsede.org

Genomics Toolkit

Genome Analysis Tools Look here of complete list of tools -> https://iujetstream.atlassian.net/wiki/spaces/JWT/pages/334397443/Genomics+Toolkit+image

Affiliation: XSEDE
Provider: Indiana University (IU) Pervasive Technology Institute (PTI)
Type: Cloud Image



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