Comprehensive Software Search

Viewing: 26 - 50 of 338.

bggn213_ucsd

Based on Ubuntu 18_04 with: R 3.4.4 RStudio server 1.2.1335 NCBI blast 2.6.0 2.6.0

Affiliation: XSEDE
Provider: Indiana University (IU) Pervasive Technology Institute (PTI)
Type: Cloud Image

bgRAMOSE - Genomics Software

This image provides a platform for Brendel Group RAMOSE workflows for computational genomics. Our RAMOSE philosophy and promise: we take every effort to design our workflows such that a user can generate reproducible, accurate, and meaningful results; our software is open (source), scalable, and easy to use (so that a typical genome laboratory team should be able to run it). And, of course, our software should be ramose (having many branches; see also the ramosa pathway in grass genomics ...) - it is yours to use, modify, improve, enhance, ...

Affiliation: XSEDE
Provider: Indiana University (IU) Pervasive Technology Institute (PTI)
Type: Cloud Image

bgRAMOSE - Genomics Software

This image provides a platform for Brendel Group RAMOSE workflows for computational genomics. Our RAMOSE philosophy and promise: we take every effort to design our workflows such that a user can generate reproducible, accurate, and meaningful results; our software is open (source), scalable, and easy to use (so that a typical genome laboratory team should be able to run it). And, of course, our software should be ramose (having many branches; see also the ramosa pathway in grass genomics ...) - it is yours to use, modify, improve, enhance, ...

Affiliation: XSEDE
Provider: Indiana University (IU) Pervasive Technology Institute (PTI)
Type: Cloud Image

Bioacoustic Data Collection

Workflow for collecting and visualizing data from a bioacoustic recording device to full visualization of R spectrograms in a Drupal website. Interacts with Frog Call Analysis image to get predictions from Random Forest Classifier

Affiliation: XSEDE
Provider: Indiana University (IU) Pervasive Technology Institute (PTI)
Type: Cloud Image

Bioacoustic Data Collection

Workflow for collecting and visualizing data from a bioacoustic recording device to full visualization of R spectrograms in a Drupal website. Interacts with Frog Call Analysis image to get predictions from Random Forest Classifier

Affiliation: XSEDE
Provider: Indiana University (IU) Pervasive Technology Institute (PTI)
Type: Cloud Image

Bioacoustic Data Collection

Workflow for collecting and visualizing data from a bioacoustic recording device to full visualization of R spectrograms in a Drupal website. Interacts with Frog Call Analysis image to get predictions from Random Forest Classifier

Affiliation: XSEDE
Provider: Indiana University (IU) Pervasive Technology Institute (PTI)
Type: Cloud Image

Bioacoustic Data Collection

HALF of workflow for collecting and visualizing data from a bioacoustic recording device to full visualization of R spectrograms in a Drupal website. *****Intermittent image to check for security holes.

Affiliation: XSEDE
Provider: Indiana University (IU) Pervasive Technology Institute (PTI)
Type: Cloud Image

Bioacoustic Data Collection

Workflow for collecting and visualizing data from a bioacoustic recording device to full visualization of R spectrograms in a Drupal website.

Affiliation: XSEDE
Provider: Indiana University (IU) Pervasive Technology Institute (PTI)
Type: Cloud Image

Bioc3.10_docker_singularity

R+ Bioconductor plus docker and singularity

Affiliation: XSEDE
Provider: Indiana University (IU) Pervasive Technology Institute (PTI)
Type: Cloud Image

Bioc_37_ubu16

Bioconductor resources for version 3.7, R 3.5 in Ubunto

Affiliation: XSEDE
Provider: Indiana University (IU) Pervasive Technology Institute (PTI)
Type: Cloud Image

biocBBS_2019aug7_ub1804

Includes CERN ROOT in /usr/local for xps. Sufficient infrastructure to provision R 3.6 to build/check 1625 Bioc software packages. The image of R for building these packages consumes about 80GB so must be built on an attached volume. The whole build process requires temp space on the attached volume. At least 300GB will be required.

Affiliation: XSEDE
Provider: Indiana University (IU) Pervasive Technology Institute (PTI)
Type: Cloud Image

BioEnergy Portal UTSA

Made Changes the shell script that fetches data from TACC Corral Storage to Jetstream

Affiliation: XSEDE
Provider: Indiana University (IU) Pervasive Technology Institute (PTI)
Type: Cloud Image

BWW Project Docker and TDS

Imported Application - BWW Project Docker and TDS

Affiliation: XSEDE
Provider: Indiana University (IU) Pervasive Technology Institute (PTI)
Type: Cloud Image

CAFE Phylogenetics Tutorial

CAFE (Computational Analysis of gene Family Evolution) is an application that analyzes changes in gene family size in a way that accounts for phylogenetic history and provides a statistical foundation for evolutionary inferences. This image includes a tutorial for a full CAFE pipeline including the applications CAFE, BLAST, MCL and r8s.

Affiliation: XSEDE
Provider: Indiana University (IU) Pervasive Technology Institute (PTI)
Type: Cloud Image

CentOS 6 (6.10) Development GUI

Based on CentOS 6 (6.10) Development - updated from 6.9 to 6.10 Installation size ~ 4.4GB

Affiliation: XSEDE
Provider: Indiana University (IU) Pervasive Technology Institute (PTI)
Type: Cloud Image

Centos 7.4 based R 3.4.2 ANTs

Test image with: R 3.4.2, Advance Normalization Tools, 3D Slicer and Rstudio patched up to 12_17_2017

Affiliation: XSEDE
Provider: Indiana University (IU) Pervasive Technology Institute (PTI)
Type: Cloud Image

Centos 7 (7.8) Development GUI

Centos 7 (7.8) Development GUI Installation size ~ 4.5GB

Affiliation: XSEDE
Provider: Indiana University (IU) Pervasive Technology Institute (PTI)
Type: Cloud Image

Centos 7 Devel with Anaconda

Centos 7 (7.8) Development GUI with Anaconda installed into /opt/anaconda2 Installation size ~ 9.0GB - Requires an m1.small or larger

Affiliation: XSEDE
Provider: Indiana University (IU) Pervasive Technology Institute (PTI)
Type: Cloud Image

Centos7 - GlobalNOC

Imported Application - Centos7 - GlobalNOC

Affiliation: XSEDE
Provider: Indiana University (IU) Pervasive Technology Institute (PTI)
Type: Cloud Image

Centos7_with_R_ANTsR

Centos 7 with R/Rstudio/Slicer and ANTsR installed. Up to date 12_17_2017

Affiliation: XSEDE
Provider: Indiana University (IU) Pervasive Technology Institute (PTI)
Type: Cloud Image

Centos 8 (8.2) Development GUI

Centos 8 (8.2) Development GUI Installation size ~ 5.0G

Affiliation: XSEDE
Provider: Indiana University (IU) Pervasive Technology Institute (PTI)
Type: Cloud Image

Chemcompute Master Node

Imported Application - Chemcompute Master Node

Affiliation: XSEDE
Provider: Indiana University (IU) Pervasive Technology Institute (PTI)
Type: Cloud Image

Chemcompute Slave

Imported Application - Chemcompute Slave

Affiliation: XSEDE
Provider: Indiana University (IU) Pervasive Technology Institute (PTI)
Type: Cloud Image

Ciliates Popupjb

Current Iteration of JBrowse image end of april 2019

Affiliation: XSEDE
Provider: Indiana University (IU) Pervasive Technology Institute (PTI)
Type: Cloud Image



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