Viewing: 1 - 25 of 46.
The overarching goal of this exploratory project is to accelerate biomedical innovation and enable personalized medicine in a cost-effective manner. We will achieve that by (1) identifying sweet-spot genomics architectures that are based on existing electronic components and are accessible via conventional programming models, which achieve performance/density/cost that is >10√ó superior to that of commodity architecture, and which can be produced in high volume116, (2) accelerating adoption of these architectures by removing the barriers formed by current software infrastructure117, and (3) developing key algorithms118 and their mappings to the sweet-spot architecture for workflows to be accelerated, including disease-associated variant calling, metagenomics, and de novo assembly.
Affiliation: UIUC
Provider: Center for Computational Biotechnology and Genomic Medicine (CCBGM)
Type: Software
We maintain one long-term computer lab (15 seats) and a number of flexible all-in-one (AIO) and laptop computers that can be setup in any fashion in other locations throughout the building. Generally our staffing and space capacity allow us to facilitate up to 30 participants in workshops, so long as they are split into two groups, or 45 if we split people up into three groups.
Affiliation: UIUC
Provider: Champaign-Urbana Community Fab Lab
Type: Software
A scalable research data management system you can install in your own cloud.
Clowder is a research data management system designed to support any data format and multiple research domains. The core software has been in development for the past five years with funding from a variety of sources. Clowder is open source software and we are always looking for collaborators and contributions. You can try the demo site or start installing the software on your resources. If you have any questions please email us or join us on HipChat.
Affiliation: UIUC
Provider: National Center for Supercomputing Applications (NCSA)
Type: Software
Our research focuses on the computational foundations of intelligent behavior. We develop theories and systems pertaining to intelligent behavior using a unified methodology -- at the heart of which is the idea that learning has a central role in intelligence.
Affiliation: UIUC
Provider: Computer Science (CS)
Type: Software
The CyberDashboard is a stand-alone Java application that accompanies and communicates with the CyberCollaboratory portal through a publish/subscribe messaging service using the event broker. Users download the CyberDashboard to their desktop and subscribe to portal monitoring services. Information regarding workflows, user activities, and other activities in the portal is passed to/from the CyberDashboard through the event manager.
Affiliation: UIUC
Provider: National Center for Supercomputing Applications (NCSA)
Type: Software
Cyberintegrator is a user friendly editor to several middleware software components that (1) enable users to easily include tools and data sets into a software/data unifying environment, (2) annotate data, tools and workflows with metadata, (3) visualize data and metadata, (4) share data and tools using local and remote context repository, (5) execute step-by-step workflows during scientific explorations, and (6) gather provenance information about tool executions and data creations.
Affiliation: UIUC
Provider: National Center for Supercomputing Applications (NCSA)
Type: Software
The ECID cyber environment currently integrates five major components – a collaborative portal, workflow engine, event manager, metadata repository, and social networking capabilities – that have novel features inspired by the Cyberenvironment concept and by real-world environmental research scenarios.
Affiliation: UIUC
Provider: National Center for Supercomputing Applications (NCSA)
Type: Software
With an increasingly urbanized and mobile population, the likelihood of a worldwide pandemic is increasing. With rising input sizes and strict deadlines for simulation results, e.g., for real-time planning during the outbreak of an epidemic, we must expand the use of high performance computing (HPC) approaches and, in particular, push the boundaries of scalability for this application area. EpiSimdemics simulates epidemic diffusion in extremely large and realistic social contact networks. It captures dynamics among co-evolving entities. Such applications typically involve large-scale, irregular graph processing, which makes them difficult to scale due to irregular communication, load imbalance, and the evolutionary nature of their workload.
Affiliation: UIUC
Provider: Computer Science (CS)
Type: Software
eText is a digital book textbook platform that can embed multimedia, notes, and assignments directly into a digital textbook. eText content can be used with any computer, tablet, or phone. All content is accessible to students with visual and hearing impairments.
Technology Services Software Services provides a web-based storefront for the purchase of campus eText offerings. Questions or issues regarding the purchase of eTexts may be directed to the WebStore at webstore@illinois.edu. Questions regarding the use or support of eTexts should be directed to eText@illinois.edu.
Affiliation: UIUC
Provider: Technology Services
Type: Software
The ECID Event Manager uses a publish-subscribe service powered by JMS (Java Messaging Service) with semantics-enhanced messages that use RDF (Resource Description Framework) triples to allow the exchange of contextual information about the eve
Affiliation: UIUC
Provider: National Center for Supercomputing Applications (NCSA)
Type: Software
The Faucets project was carried out in the context of grids in early-mid 2000s. Some of the research that we carried out under Faucets projects is becoming increasingly relevant today. E.g. malleable jobs and market-driven pricing are gaining importance in HPC in cloud scenarios.
Affiliation: UIUC
Provider: Computer Science (CS)
Type: Software
GeneMapper® Software is a flexible genotyping software package that provides DNA sizing and quality allele calls for all Life Technologies¬Æ electrophoresis-based genotyping systems.The GeneMapper Remote Desktop is shared among all of the researchers who make use of our facility for fragment analysis applications.
Affiliation: UIUC
Provider: Institute for Genomic Biology (IGB)
Type: Software
GRASP (GestuRe Augmented Simulations for supporting exPlanations) is an NSF-funded collaboration between the University of Illinois at Urbana-Champaign and Concord Consortium. The goal of this project is to understand the role that gestures play in reasoning about critical concepts in science.
Affiliation: UIUC
Provider: College of Education
Type: Software
A cutting-edge facility, IDEALL serves as a blank-slate data collection environment, providing the infrastructure for fine-grained research on learning with emerging technologies.Enables scholars to study learner interactions with digital technologies in real-time.
Allows investigators to create technology-enhanced learning environments, and research their impact on student learning.
Collects and stores massive and varied data about learner-technology interactions, including movements
Affiliation: UIUC
Provider: College of Education
Type: Software
In general, the driver for the Im2Learn suite of tools is to address the gap between complex multi-instrument raw data and knowledge relevant to any specific application. The objective of the Im2Learn suite of tools is to research and develop solutions to real life problems in the application areas of:
machine vision,
precision farming,
land use and land cover classification,
map analysis,
geo-spatial information systems (GIS),
synthetic aperture radar (SAR) target and multi-spectral scene modeling,
video surveillance,
bio-informatics,
microscopy and medical image processing, and
advanced sensor environments.
The main goal of the Im2Learn research and development is to automate information processing of repetitive, laborious and tedious analysis tasks and build user-friendly decision-making systems that operate in automated or semi-automated mode in a variety of applications. The development is based on theoretical foundations of image and video processing, computer vision, data fusion, statistical and spectral modeling
Affiliation: UIUC
Provider: National Center for Supercomputing Applications (NCSA)
Type: Software
Illumina Beadarray technology applications include expression analysis, SNP genotyping for genome‚wide association studies, QTL mapping, copy number variations, and methylation analysis. Illumina provides off‐the‐shelf high‐density SNP Beadarrays for maize, Arabidopsis, human, bovine, canine, sheep, and pig with additional assays planned as genome sequence becomes available.
Affiliation: UIUC
Provider: College of Agricultural, Consumer and Environmental Sciences (ACES)
Type: Software
Minrva is an app that repackages library resources in a more organized, streamlined, readily available format. With Minrva, students will be able to bring a piece of the library wherever they go.
Affiliation: UIUC
Provider: University Library
Type: Software
MOE (Molecular Operating Environment) is a comprehensive software system for Life Science. MOE is a combined Applications Environment and Methodology Development Platform that integrates visualization, simulation and application development in one package. MOE contains a broad base of scientific applications for general modeling, drug design, homology modeling, library design.
Affiliation: UIUC
Provider: School of Chemical Sciences (SCS)
Type: Software
Research in the MONET research group focuses on system software issues to provide services and protocols for end-to-end Quality of Service (QoS) guarantees for distributed multimedia applications, leveraging the best effort services provided by the underlying operating system and networks. Toward this goal, we are doing research in a broad area including (but not limited to):
Multimedia operating systems
Multimedia communication protocols
QoS middleware and large scale distributed systems
Multimedia security and trustworthy computing systems
Advanced tele-immersive and multimedia applications
High speed QoS routing and ad hoc networks
Affiliation: UIUC
Provider: Computer Science (CS)
Type: Software
We would like to thank Atlassian, Sontatype, IntelliJ and YourKit for the tools provided and their commitment to Open Source software.
We would like to thank ISDA and NCSA for providing the hardware to host this service as well as the man hours to maintain it.
Affiliation: UIUC
Provider: National Center for Supercomputing Applications (NCSA)
Type: Software
PEcAn is open-source and built using open source software, and we benefit from the use of a wide range of other software, including R, JAGS, MySQL, Ruby on Rails, PHP, C, and Fortran. In addition, we appreciate the availability of development tools including RStudio, Emacs, Navicat, and Git/GitHub
Affiliation: UIUC
Provider: National Center for Supercomputing Applications / PEcAN
Type: Software
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