Comprehensive Software Search

Viewing: 1 - 19 of 19.

Abaqus

The Abaqus Unified FEA provides analysis for engineering problems such as  dynamic vibration, multibody systems, impact/crash, nonlinear static, thermal coupling, and acoustic-structural coupling using a common model data structure and integrated solver technology

Provider: GridChem/SEAGrid
Type: Gateway Software

Abinit

ABINIT is a software suite to calculate the optical, mechanical, vibrational, and other observable properties of materials. Starting from the quantum equations of density functional theory, you can build up to advanced applications with perturbation theories based on DFT, and many-body Green's functions (GW and DMFT) .

Provider: GridChem/SEAGrid
Type: Gateway Software

Amber

Amber is a package of molecular simulation programs.

Provider: GridChem/SEAGrid
Type: Gateway Software

AutoDOCK

AutoDock is a suite of automated docking tools. It is designed to predict how small molecules, such as substrates or drug candidates, bind to a receptor of known 3D structure.

Provider: GridChem/SEAGrid
Type: Gateway Software

Autodock_vina

AutoDock Vina is an open-source program for doing molecular docking. It was designed and implemented by Dr. Oleg Trott in the Molecular Graphics Lab at The Scripps Research Institute.

Provider: GridChem/SEAGrid
Type: Gateway Software

CP2K

CP2K is a quantum chemistry and solid state physics software package that can perform atomistic simulations of solid state, liquid, molecular, periodic, material, crystal, and biological systems.

Provider: GridChem/SEAGrid
Type: Gateway Software

CP2K

CP2K is a quantum chemistry and solid state physics software package that can perform atomistic simulations of solid state, liquid, molecular, periodic, material, crystal, and biological systems.

Provider: GridChem/SEAGrid
Type: Gateway Software

CPMD

The CPMD code is a parallelized plane wave / pseudopotential implementation of Density Functional Theory, particularly designed for ab-initio molecular dynamics.

Provider: GridChem/SEAGrid
Type: Gateway Software

DDScat

Discrete Dipole Scattering (DDSCAT) is a Fortran code for calculating scattering and absorption of light by irregular particles and periodic arrangement of irregular particles.  

Provider: GridChem/SEAGrid
Type: Gateway Software

Gamess

A wide range of quantum chemical computations are possible using GAMESS, which alculates RHF, UHF, ROHF, GVB, or MCSCF self consistent field molecular wave functions using various density functional, ab-inito and semi-empirical methods and computes properties. 

Provider: GridChem/SEAGrid
Type: Gateway Software

Gaussian16 available on Bridges

Quantum Chemistry and DFT Software suite.

Provider: GridChem/SEAGrid
Type: Gateway Software

gromacs

GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. It is primarily designed for biochemical molecules like proteins, lipids and nucleic acids that have a lot of complicated bonded interactions, but since GROMACS is extremely fast at calculating the nonbonded interactions (that usually dominate simulations) many groups are also using it for research on non-biological systems, e.g. polymers.

Provider: GridChem/SEAGrid
Type: Gateway Software

lammps

LAMMPS is a classical molecular dynamics code, and an acronym for Large-scale Atomic/Molecular Massively Parallel Simulator. LAMMPS has potentials for solid-state materials (metals, semiconductors) and soft matter (biomolecules, polymers) and coarse-grained or mesoscopic systems. It can be used to model atoms or, more generically, as a parallel particle simulator at the atomic, meso, or continuum scale.

Provider: GridChem/SEAGrid
Type: Gateway Software

namd

NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems.

Provider: GridChem/SEAGrid
Type: Gateway Software

Nek5000

Nek5000 is a fast and scalable high-order spectral element solver for computational fluid dynamics

Provider: GridChem/SEAGrid
Type: Gateway Software

NWChem

NWChem aims to provide its users with computational chemistry tools that are scalable both in their ability to treat large scientific computational chemistry problems efficiently, and in their use of available parallel computing resources from high-performance parallel supercomputers to conventional workstation clusters.

Provider: GridChem/SEAGrid
Type: Gateway Software

PSI4

PSI4 is an open-source suite of ab initio quantum chemistry programs designed for efficient, high-accuracy simulations of a variety of molecular properties.

Provider: GridChem/SEAGrid
Type: Gateway Software

QChem

Q-Chem is a comprehensive ab initio quantum chemistry package for accurate predictions of molecular structures, reactivities, and vibrational, electronic and NMR spectra.

Provider: GridChem/SEAGrid
Type: Gateway Software

QuantumEspresso

QuantumEspresso is an integrated suite of Open-Source computer codes for electronic-structure calculations and materials modeling at the nanoscale. It is based on density-functional theory, plane waves, and pseudopotentials.

Provider: GridChem/SEAGrid
Type: Gateway Software