Research Resource Discovery

Unidata Integrated Data Viewer (IDV) version 5.5

Unidata AWIPS EDEX Standalone Data Server_o

Unidata AWIPS EDEX Standalone Data Server

Unidata AWIPS EDEX Ingest Node (no PostgreSQL or HDF5)

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis. You write a high level configuration file specifying your inputs and analysis parameters. This input drives a parallel run that handles distributed execution, idempotent processing restarts and safe transactional steps. bcbio provides a shared community resource that handles the data processing component of sequencing analysis, providing researchers with more time to focus on the downstream biology.

Anvi’o is an open-source, community-driven analysis and visualization platform for ‘omics data. Documentation- http://merenlab.org/software/anvio/ This image was made by National Center for Genome Analysis Support (NCGAS)- ncgas.org. We will soon have docmentation to use this image. If you have any questions regarding this image email us at help@ncgas.oeg

Workflow for collecting and visualizing data from a bioacoustic recording device to full visualization of R spectrograms in a Drupal website. Interacts with Frog Call Analysis image to get predictions from Random Forest Classifier

Workflow for collecting and visualizing data from a bioacoustic recording device to full visualization of R spectrograms in a Drupal website. Interacts with Frog Call Analysis image to get predictions from Random Forest Classifier

Workflow for collecting and visualizing data from a bioacoustic recording device to full visualization of R spectrograms in a Drupal website. Interacts with Frog Call Analysis image to get predictions from Random Forest Classifier

A bioinformatics image for the SDSU Bio696 Advanced Biological Data Analysis Class.

This VM has RStudio Server installed along with R 3.6, bioconductor 3.9, and many pre-loaded packages for doing genomic analysis, analyzing phylogenetic trees, and manipulating ecological data into and XLM according to the Ecological Metadata Language standards. This is also the preferred image for the "Introduction for R for Biologists" course through NCGAS. R version: 3.6 bioconductor version: 3.9

MEGAN ("MEtaGenome ANalyzer") is a computer program that allows optimized analysis of large metagenomic datasets. For more information https://ab.inf.uni-tuebingen.de/software/megan6 This instance hosts the MEGAN v6 community edition software

QIIME2 Toolkit- Quantitative Insights into Microbial Ecology is an open-source bioinformatics pipeline for performing microbiome analysis from raw DNA sequencing data.

Sensor data collection for field stations to aggregate and display data on a web portal (Drupal 7 based)

Imported Application - AutoDock Vina with ChemBridge Data

This contains the base webpage, R packages, sample database on postgresql, and documentation for collecting data from Raspberry Pi recording devices

HALF of workflow for collecting and visualizing data from a bioacoustic recording device to full visualization of R spectrograms in a Drupal website. *****Intermittent image to check for security holes.

Workflow for collecting and visualizing data from a bioacoustic recording device to full visualization of R spectrograms in a Drupal website.

HALF of workflow for bioacoustic analysis by Random Forest. *****Intermittent image to check for security holes.

HALF of workflow for bioacoustic analysis by Random Forest.

HALF of workflow for bioacoustic analysis by Random Forest. Complete with minimalist documentation

HALF of workflow for bioacoustic analysis by Random Forest.

Includes workflow for collection of bioacoustic frog data and identification to a webpage from 2018 REU

MongoDB version 4.2, Pandas version 0.24.2 and PyMongo version 3.9.0 - These software are being used for Project A in the course INFO I-535 MGMT ACCESS USE BIG DATA

Image for the IU course "I535 Mgm, access, and use of big and complex data". Based on CentOS 7, includes Python2, Python3, MongoDB, pymongo.