Comprehensive Software Search

Viewing: 1 - 25 of 43.

Unidata IDV 5.5e

Unidata Integrated Data Viewer (IDV) version 5.5

Type: Cloud Image

AWIPS EDEX Standalone Server_o

Unidata AWIPS EDEX Standalone Data Server_o

Type: Cloud Image

AWIPS EDEX Standalone

Unidata AWIPS EDEX Standalone Data Server

Type: Cloud Image

AWIPS EDEX Ingest Node

Unidata AWIPS EDEX Ingest Node (no PostgreSQL or HDF5)

Type: Cloud Image

bcbio-nextgen

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis. You write a high level configuration file specifying your inputs and analysis parameters. This input drives a parallel run that handles distributed execution, idempotent processing restarts and safe transactional steps. bcbio provides a shared community resource that handles the data processing component of sequencing analysis, providing researchers with more time to focus on the downstream biology.

Type: Cloud Image

Anvio

Anvi’o is an open-source, community-driven analysis and visualization platform for ‘omics data. Documentation- http://merenlab.org/software/anvio/ This image was made by National Center for Genome Analysis Support (NCGAS)- ncgas.org. We will soon have docmentation to use this image. If you have any questions regarding this image email us at help@ncgas.oeg

Type: Cloud Image

SDSU Bio696 Ad Bio Data Anal

A bioinformatics image for the SDSU Bio696 Advanced Biological Data Analysis Class.

Type: Cloud Image

Ubuntu18_04 RStudio for NCGAS

This VM has RStudio Server installed along with R 3.6, bioconductor 3.9, and many pre-loaded packages for doing genomic analysis, analyzing phylogenetic trees, and manipulating ecological data into and XLM according to the Ecological Metadata Language standards. This is also the preferred image for the "Introduction for R for Biologists" course through NCGAS. R version: 3.6 bioconductor version: 3.9

Type: Cloud Image

MEGAN Community Edition v6

MEGAN ("MEtaGenome ANalyzer") is a computer program that allows optimized analysis of large metagenomic datasets. For more information https://ab.inf.uni-tuebingen.de/software/megan6 This instance hosts the MEGAN v6 community edition software

Type: Cloud Image

QIIME2 toolkit

QIIME2 Toolkit- Quantitative Insights into Microbial Ecology is an open-source bioinformatics pipeline for performing microbiome analysis from raw DNA sequencing data.

Type: Cloud Image

Harvesting Field Station Data

Sensor data collection for field stations to aggregate and display data on a web portal (Drupal 7 based)

Type: Cloud Image

AutoDock Vina with ChemBridge Data

Imported Application - AutoDock Vina with ChemBridge Data

Type: Cloud Image

Base for Automated Frog ID

This contains the base webpage, R packages, sample database on postgresql, and documentation for collecting data from Raspberry Pi recording devices

Type: Cloud Image

Bioacoustic Data Collection

Workflow for collecting and visualizing data from a bioacoustic recording device to full visualization of R spectrograms in a Drupal website.

Type: Cloud Image

Harvesting Field Station Data

Includes workflow for collection of bioacoustic frog data and identification to a webpage from 2018 REU

Type: Cloud Image

I535-MGMT-DATA-FA19

MongoDB version 4.2, Pandas version 0.24.2 and PyMongo version 3.9.0 - These software are being used for Project A in the course INFO I-535 MGMT ACCESS USE BIG DATA

Type: Cloud Image

IUNI-GUILD Database

Imported Application - IUNI-GUILD Database

Type: Cloud Image

Jupyter Notebook

Jupyter Notebook is an open-source web application that allows you to create and share documents that contain live code, equations, visualizations and narrative text. Uses include: data cleaning and transformation, numerical simulation, statistical modeling, data visualization, machine learning, and much more.

Type: Cloud Image

Matlab (R2019a - Ubuntu 16.04)

Matlab R2019a install - requires an **m1.medium** or larger Based on Ubuntu 16.04 LTS Development + GUI support + Docker Installation size ~ 36GB Licensed for: Standard Suite (MATLAB and Simulink) AUTOSAR Blockset Antenna Toolbox Bioinformatics Toolbox Communications Toolbox Control System Toolbox Curve Fitting Toolbox DSP System Toolbox Database Toolbox Datafeed Toolbox Deep Learning Toolbox Econometrics Toolbox Embedded Coder Filter Design HDL Coder Financial Instruments Toolbox Financial Toolbox Fixed-Point Designer Fuzzy Logic Toolbox GPU Coder Global Optimization Toolbox HDL Coder HDL Verifier Image Acquisition Toolbox Image Processing Toolbox Instrument Control Toolbox LTE HDL Toolbox LTE Toolbox MATLAB Coder MATLAB Compiler MATLAB Compiler SDK MATLAB Report Generator Mapping Toolbox Mixed-Signal Blockset Model Predictive Control Toolbox Optimization Toolbox Parallel Computing Toolbox Partial Differential Equation Toolbox Phased Array System Toolbox Powertrain Blockset Predictive Maintenance Toolbox Reinforcement Learning Toolbox Risk Management Toolbox Robotics System Toolbox Robust Control Toolbox Sensor Fusion and Tracking Toolbox SerDes Toolbox Signal Processing Toolbox SimBiology SimEvents Simscape Simscape Driveline Simscape Electrical Simscape Fluids Simscape Multibody Simulink 3D Animation Simulink Check Simulink Code Inspector Simulink Coder Simulink Control Design Simulink Coverage Simulink Design Optimization Simulink Design Verifier Simulink Report Generator Simulink Requirements Simulink Test SoC Blockset Stateflow Statistics and Machine Learning Toolbox Symbolic Math Toolbox System Composer System Identification Toolbox Text Analytics Toolbox Trading Toolbox Vision HDL Toolbox Wavelet Toolbox

Type: Cloud Image

Mining SRA to identify dataset

This image walks through the steps to search the SRA using the SearhSRA gateway, and set of steps for filtering and visualizing the output generated. This is workflow developed by NCGAS and Rob Edwards with CEWiT REU students. For more information on the developed workflow, the information is available here https://github.com/NCGAS/CEWiT-REU-Identifying-datasets-in-SRA-using-Jetstream

Type: Cloud Image

NodeJS for mongodb data inject v.1.0

Private, NodeJS which listens data request from app and feed to mongodb. This will be used as pre-processor of the yield meter in bigger cluster.

Type: Cloud Image

PacBio SMRT Analysis

SMRT Portal and SMRT Analysis

Type: Cloud Image

RNA-seq analysis phylogenetics

Imported Application - RNA-seq analysis phylogenetics

Type: Cloud Image

RNAseq analysis phylogenetics

Imported Application - RNAseq analysis phylogenetics

Type: Cloud Image

betaPic_39um_w_fake_planets v.0.4

Has fake planets injected at /findr/Data/fp*

Type: Cloud Image



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