Comprehensive Software Search

Viewing: 1 - 25 of 140.

Abaqus

The Abaqus Unified FEA provides analysis for engineering problems such as  dynamic vibration, multibody systems, impact/crash, nonlinear static, thermal coupling, and acoustic-structural coupling using a common model data structure and integrated solver technology

Type: Gateway Software

Unidata IDV 5.5e

Unidata Integrated Data Viewer (IDV) version 5.5

Type: Cloud Image

AWIPS EDEX Standalone Server_o

Unidata AWIPS EDEX Standalone Data Server_o

Type: Cloud Image

AWIPS EDEX Standalone

Unidata AWIPS EDEX Standalone Data Server

Type: Cloud Image

dakota 6.8.0

Dakota toolkit provides a flexible, extensible interface between analysis codes and iterative systems analysis methods

Type: Executable Software
Resource: stampede2.tacc.xsede.org

GridFTP data transfer endpoint

Globus GridFTP data transfer endpoint

Type: Network Service
Resource: comet-gpu.sdsc.xsede.org

GridFTP data transfer endpoint

Globus GridFTP data transfer endpoint

Type: Network Service
Resource: comet.sdsc.xsede.org

GridFTP data transfer endpoint

Globus GridFTP data transfer endpoint

Type: Network Service
Resource: bridges.psc.xsede.org

GridFTP data transfer endpoint

Globus GridFTP data transfer endpoint

Type: Network Service
Resource: stampede2.tacc.xsede.org

abaqus 2019

Abaqus is a software suite for finite element analysis and computer-aided engineering.

Type: Executable Software
Resource: stampede2.tacc.xsede.org

abaqus 2020

Abaqus is a software suite for finite element analysis and computer-aided engineering.

Type: Executable Software
Resource: stampede2.tacc.xsede.org

AWIPS EDEX Ingest Node

Unidata AWIPS EDEX Ingest Node (no PostgreSQL or HDF5)

Type: Cloud Image

bcbio-nextgen

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis. You write a high level configuration file specifying your inputs and analysis parameters. This input drives a parallel run that handles distributed execution, idempotent processing restarts and safe transactional steps. bcbio provides a shared community resource that handles the data processing component of sequencing analysis, providing researchers with more time to focus on the downstream biology.

Type: Cloud Image

Anvio

Anvi’o is an open-source, community-driven analysis and visualization platform for ‘omics data. Documentation- http://merenlab.org/software/anvio/ This image was made by National Center for Genome Analysis Support (NCGAS)- ncgas.org. We will soon have docmentation to use this image. If you have any questions regarding this image email us at help@ncgas.oeg

Type: Cloud Image

qorts 44ab10d

The QoRTs software package is a fast, efficient, and portable multifunction toolkit designed to assist in the analysis, quality control, and data management of RNA-Seq datasets.

Type: Executable Software
Resource: bridges.psc.xsede.org

SDSU Bio696 Ad Bio Data Anal

A bioinformatics image for the SDSU Bio696 Advanced Biological Data Analysis Class.

Type: Cloud Image

Service Provider Mass Storage Systems

Some XSEDE Service Providers (SPs) offer mass storage systems. These systems provide orders of magnitude more data storage than personal or (most) academic departmental storage systems and are intended to facilitate high-end scientific computing and data analysis activities. These mass storage systems are nearly always accessible via the command-line interface offered by the SP's computation resources. Some SPs also offer other interfaces to their mass storage systems (e.g., GridFTP, Globus, and similar network interfaces).

Type: Network Service

Ubuntu18_04 RStudio for NCGAS

This VM has RStudio Server installed along with R 3.6, bioconductor 3.9, and many pre-loaded packages for doing genomic analysis, analyzing phylogenetic trees, and manipulating ecological data into and XLM according to the Ecological Metadata Language standards. This is also the preferred image for the "Introduction for R for Biologists" course through NCGAS. R version: 3.6 bioconductor version: 3.9

Type: Cloud Image

anvio 2.0.2

Anvi'o is an analysis and visualization platform for 'omics data.

Type: Executable Software
Resource: bridges.psc.xsede.org

anvio 2.2.2

Anvi'o is an analysis and visualization platform for 'omics data.

Type: Executable Software
Resource: bridges.psc.xsede.org

anvio 2.3.1

Anvi'o is an analysis and visualization platform for 'omics data.

Type: Executable Software
Resource: bridges.psc.xsede.org

anvio 2.3.2

Anvi'o is an analysis and visualization platform for 'omics data.

Type: Executable Software
Resource: bridges.psc.xsede.org

anvio 2.4.0

Anvi'o is an analysis and visualization platform for 'omics data.

Type: Executable Software
Resource: bridges.psc.xsede.org

anvio 3

Anvi'o is an analysis and visualization platform for 'omics data.

Type: Executable Software
Resource: bridges.psc.xsede.org

deeptools 2.3.5

deepTools is a suite of python tools developed for analysis of high-througput sequencing data

Type: Executable Software
Resource: bridges.psc.xsede.org



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