Research Tools and Services Discovery
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| Ensembl genome Online Service The Ensembl genome annotation system, developed jointly by the EBI and the Wellcome Trust Sanger Institute, has been used for the annotation, analysis and display of vertebrate genomes since 2000. Related Science Gateway resources:
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| OMA Online Service The OMA (“Orthologous MAtrix”) project is a method and database for the inference of orthologs among complete genomes. Related Science Gateway resources:
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| Phylogeny.fr Online Service Phylogeny.fr has been designed to provide a high performance platform that transparently chains programs relevant to phylogenetic analysis in a comprehensive, and flexible pipeline. Although phylogenetic aficionados will be able to find most of their favorite tools and run sophisticated analysis, the primary philosophy of Phylogeny.fr is to assist biologists with no experience in phylogeny in analyzing their data in a robust way. Related Science Gateway resources:
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| SciStarter Online Service SciStarter is the place to find, join, and contribute to science through more than 1600 formal and informal research projects, events and tools. Our database of citizen science projects enables discovery, organization, and greater participation in science. This is also the place to track your conributions, bookmark things you like, and access the tools and instruments needed to get started. Related Science Gateway resources:
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| Center for Open Science Online Service Our mission is to provide expertise, tools, and training to help researchers create and promote open science within their teams and institutions. Promoting these practices within the research funding and publishing communities accelerates scientific progress Related Science Gateway resources:
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| Critical Zone Observatories Online Service The National CZO Program is a community resource. The Program serves the international scientific community through research, infrastructure, data, and models. We focus on how components of the Critical Zone interact, shape Earth's surface, and support life. If you are interested in conducting research at one or more of the CZOs Related Science Gateway resources:
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| DENIS@Home Online Service DENIS uses volunteer hosts to compute large packets of cardiac electrophysiology simulations. You can participate by downloading and running a free program on your computer. By using the idle time of your computer, you’d be helping researchers on their research projects which require vast amounts of computing power. Related Science Gateway resources:
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| PrimeGrid Online Service PrimeGrid's primary goal is to bring the excitement of prime finding to the "everyday" computer user. By simply downloading and installing BOINC and attaching to the PrimeGrid project, participants can choose from a variety of prime forms to search. With a little patience, you may find a large or even record breaking prime and enter into Chris Caldwell's The Largest Known Primes Database as a Titan! Related Science Gateway resources:
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| SETI@Home Online Service SETI@home is a scientific experiment, based at UC Berkeley, that uses Internet-connected computers in the Search for Extraterrestrial Intelligence (SETI). You can participate by running a free program that downloads and analyzes radio telescope data. Related Science Gateway resources:
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| POEM@Home Online Service Models protein folding using Anfinsen's dogma Related Science Gateway resources:
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| Einstein@Home Online Service Einstein@Home is a program that uses your computer's idle time to search for gravitational waves from spinning isolated compact objects (among which are pulsars) using data from the LIGO gravitational wave detector. Related Science Gateway resources:
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| Eclipse PTP Online Service The PTP project provides an integrated development environment to support the development of parallel applications written in C, C++, and Fortran Related Science Gateway resources:
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| Ocean Networks Canada Online Service Ocean Networks Canada operates world-leading ocean observatories for the advancement of science and the benefit of Canada. The observatories collect data on physical, chemical, biological, and geological aspects of the ocean over long time periods, supporting research on complex Earth processes in ways not previously possible. Associated Institutions:University of Victoria Related Science Gateway resources:
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| GIOVANNI Online Service Giovanni is an online (Web) environment for the display and analysis of geophysical parameters in which the provenance (data lineage) can easily be accessed. Associated Institutions:NASA Related Science Gateway resources:
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| NEWT(NERSC Web Toolkit) Online Service NEWT is bringing High Performance Computing (HPC) to the web through easy to write web applications. We think that writing applications for the web should be a simple task. We want to make HPC resources accessible and useful to scientists who are more comfortable with the web than they are with compilers, batch queues, or punched cards. Thanks to Web 2.0 APIs, we believe HPC can speak the same language as the web. Associated Institutions:NERSC Related Science Gateway resources:
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| nectar Online Service The National eResearch Collaboration Tools and Resources project (Nectar) provides an online infrastructure that supports researchers to connect with colleagues in Australia and around the world, allowing them to collaborate and share ideas and research outcomes, which will ultimately contribute to our collective knowledge and make a significant impact on our society. Associated Institutions:University of Melbourne Related Science Gateway resources:
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| VectorBase Online Service VectorBase is a National Institute of Allergy and Infectious Diseases (NIAID) Bioinformatics Resource Center (BRC) providing genomic, phenotypic and population-centric data to the scientific community for invertebrate vectors of human pathogens. Related Science Gateway resources:
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| Plant Biosecurity Online Service Plant Biosecurity is a set of measures designed to protect a crop, crops or a sub-group of crops from emergency plant pests at national, regional and individual farm levels. Associated Institutions:University of Canberra Related Science Gateway resources:
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| Crowdmap Online Service Crowdmap is a tool that allows you to crowdsource information and see it on a map and timeline. It is the Ushahidi platform, built by the team who created Ushahidi as a way for anyone to run their own crowdsourcing site without having to know the intricacies of running their own server. Associated Institutions:Ushahidi, Inc Related Science Gateway resources:
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| Humanities Networked Infrastructure (HuNI) Online Service HuNI combines data from many Australian cultural websites into the biggest humanities and creative arts database ever assembled in Australia. HuNI data covers all disciplines and brings together information about the people, works, events, organisations and places that make up the country's rich cultural landscape. Related Science Gateway resources:
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| ProteinAtlas Online Service Maps all the human proteins in cells, tissues and organs using integration of various omics technologies, including antibody-based imaging, mass spectrometry-based proteomics, transcriptomics and systems biology. All the data in the knowledge resource is open access to allow scientists both in academia and industry to freely access the data. The Human Protein Atlas consists of three separate parts, the Tissue Atlas showing the distribution of the proteins across all major tissues and organs in the human body, the Cell Atlas showing the subcellular localization of proteins in single cells, and finally the Pathology Atlas showing the impact of protein levels for survival of patients with cancer. Related Science Gateway resources:
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| Auto-Rickshaw Online Service The EMBL-Hamburg automated crystal structure determination platform is a system which contains several distinct decision-makers which executes a number of macromolecular crystallographic software programs to produce a software pipeline for automated and efficient crystal structure determination. A large number of possible structure solution paths are encoded in the system and the optimal path is selected by the decision-makers as the structure solution evolves. The processes have been optimised for speed so that the pipeline can be used effectively for validating the X-ray experiment at a synchrotron beamline. The platform offers SAD, S-SAD, SIRAS, 2W-MAD, 3W-MAD or 4W-MAD phase determination, molecular replacement (MR), MRSAD and MRSIRAS phasing. It also includes RIP and MRRIP phasing and the phasing protocols have been optimised for UV induced radiation damage X-ray data. Associated Institutions:European Molecular Biology Laboratory Related Science Gateway resources:
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| Scipion Online Service Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM). It integrates several software packages and presents an unified interface for both biologists and developers. Scipion allows to execute workflows combining different software tools, while taking care of formats and conversions. Additionally, all steps are tracked and can be reproduced later on. Related Science Gateway resources:
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| The USA National Phenology Network (USA-NPN) Online Service The USA National Phenology Network was established in 2007 to collect, store, and share phenology data and information. It supports science, natural resource management, and communication by providing data, tools, and resources and by connecting people. It consists of a National Coordinating Office (NCO), thousands of volunteer observers and many partners, including research scientists, resource managers, educators, and policy-makers. Anyone who participates in Nature’s Notebook or collaborates with NCO staff to advance the science of phenology or to inform decisions is part of the USA-NPN. Associated Institutions:US Geological Survey,The University of Arizona Related Science Gateway resources:
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| Primer3web Online Service Design PCR primers from DNA sequence. Widely used (190k Google hits for "primer3"). From mispriming libraries to sequence quality data to the generation of internal oligos, primer3 does it. C&perl. Developers/testers/documenters needed. Related Science Gateway resources:
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ACCESS is an advanced computing and data resource supported by the
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and made possible through these lead institutions and their partners:
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