Research Tools and Services Discovery

BioModels Database is a repository of computational models of biological processes. Models described from literature are manually curated and enriched with cross-references.

Related Science Gateway resources:

• Go to Science Gateway: https://www.ebi.ac.uk/biomodels-main/
• View in source catalog: https://catalog.sciencegateways.org/#/home/1108569474814185961-242ac119-0001-012
• Access source catalog: https://catalog.sciencegateways.org/#/home

BRENDA is the main collection of enzyme functional data available to the scientific community.

Related Science Gateway resources:

• Go to Science Gateway: https://www.brenda-enzymes.org/
• View in source catalog: https://catalog.sciencegateways.org/#/home/641835378757865961-242ac119-0001-012
• Access source catalog: https://catalog.sciencegateways.org/#/home

The CAZy database describes the families of structurally-related catalytic and carbohydrate-binding modules (or functional domains) of enzymes that degrade, modify, or create glycosidic bonds.

Related Science Gateway resources:

• Go to Science Gateway: http://www.cazy.org/
• View in source catalog: https://catalog.sciencegateways.org/#/home/68586093760745961-242ac119-0001-012
• Access source catalog: https://catalog.sciencegateways.org/#/home

GraphWeb is a public web server for graph-based analysis of biological networks that:

• analyses directed and undirected, weighted and unweighted heterogeneous networks of genes, proteins and microarray probesets for many eukaryotic genomes;
• integrates multiple diverse datasets into global networks;
• incorporates multispecies data using gene orthology mapping;
• filters nodes and edges based on dataset support, edge weight and node annotation;
• detects gene modules from networks using a collection of algorithms;
• interprets discovered modules using Gene Ontology, pathways, and cis-regulatory motifs.

Related Science Gateway resources:

• Go to Science Gateway: https://biit.cs.ut.ee/graphweb/
• View in source catalog: https://catalog.sciencegateways.org/#/home/858482597080919575-242ac119-0001-012
• Access source catalog: https://catalog.sciencegateways.org/#/home

STRING is a database of known and predicted protein-protein interactions. The interactions include direct (physical) and indirect (functional) associations; they stem from computational prediction, from knowledge transfer between organisms, and from interactions aggregated from other (primary) databases.

Related Science Gateway resources:

• Go to Science Gateway: https://string-db.org/cgi/input.pl
• View in source catalog: https://catalog.sciencegateways.org/#/home/4530121289412439575-242ac119-0001-012
• Access source catalog: https://catalog.sciencegateways.org/#/home

The Ensembl genome annotation system, developed jointly by the EBI and the Wellcome Trust Sanger Institute, has been used for the annotation, analysis and display of vertebrate genomes since 2000.

Related Science Gateway resources:

• Go to Science Gateway: http://ensemblgenomes.org/
• View in source catalog: https://catalog.sciencegateways.org/#/home/6537546053889879575-242ac119-0001-012
• Access source catalog: https://catalog.sciencegateways.org/#/home

The OMA (“Orthologous MAtrix”) project is a method and database for the inference of orthologs among complete genomes.

Related Science Gateway resources:

• Go to Science Gateway: https://omabrowser.org/oma/about/
• View in source catalog: https://catalog.sciencegateways.org/#/home/7364327258369879575-242ac119-0001-012
• Access source catalog: https://catalog.sciencegateways.org/#/home

Phylogeny.fr has been designed to provide a high performance platform that transparently chains programs relevant to phylogenetic analysis in a comprehensive, and flexible pipeline. Although phylogenetic aficionados will be able to find most of their favorite tools and run sophisticated analysis, the primary philosophy of Phylogeny.fr is to assist biologists with no experience in phylogeny in analyzing their data in a robust way.

Related Science Gateway resources:

• Go to Science Gateway: http://phylogeny.lirmm.fr/phylo_cgi/one_task.cgi?task_type=phyml
• View in source catalog: https://catalog.sciencegateways.org/#/home/3262183312455832041-242ac119-0001-012
• Access source catalog: https://catalog.sciencegateways.org/#/home

SciStarter is the place to find, join, and contribute to science through more than 1600 formal and informal research projects, events and tools. Our database of citizen science projects enables discovery, organization, and greater participation in science. This is also the place to track your conributions, bookmark things you like, and access the tools and instruments needed to get started.

Related Science Gateway resources:

• Go to Science Gateway: http://scistarter.com/
• View in source catalog: https://catalog.sciencegateways.org/#/home/6757527549466644966-242ac11b-0001-012
• Access source catalog: https://catalog.sciencegateways.org/#/home

Our mission is to provide expertise, tools, and training to help researchers create and promote open science within their teams and institutions. Promoting these practices within the research funding and publishing communities accelerates scientific progress

Related Science Gateway resources:

• Go to Science Gateway: https://cos.io/
• View in source catalog: https://catalog.sciencegateways.org/#/home/6753490280208404966-242ac11b-0001-012
• Access source catalog: https://catalog.sciencegateways.org/#/home

The National CZO Program is a community resource. The Program serves the international scientific community through research, infrastructure, data, and models. We focus on how components of the Critical Zone interact, shape Earth's surface, and support life. If you are interested in conducting research at one or more of the CZOs

Related Science Gateway resources:

• Go to Science Gateway: http://criticalzone.org/
• View in source catalog: https://catalog.sciencegateways.org/#/home/6768136118687764966-242ac11b-0001-012
• Access source catalog: https://catalog.sciencegateways.org/#/home

DENIS uses volunteer hosts to compute large packets of cardiac electrophysiology simulations. You can participate by downloading and running a free program on your computer. By using the idle time of your computer, you’d be helping researchers on their research projects which require vast amounts of computing power.

Related Science Gateway resources:

• Go to Science Gateway: http://denis.usj.es/
• View in source catalog: https://catalog.sciencegateways.org/#/home/6778358140852244966-242ac11b-0001-012
• Access source catalog: https://catalog.sciencegateways.org/#/home

PrimeGrid's primary goal is to bring the excitement of prime finding to the "everyday" computer user. By simply downloading and installing BOINC and attaching to the PrimeGrid project, participants can choose from a variety of prime forms to search. With a little patience, you may find a large or even record breaking prime and enter into Chris Caldwell's The Largest Known Primes Database as a Titan!

Related Science Gateway resources:

• Go to Science Gateway: http://www.primegrid.com/
• View in source catalog: https://catalog.sciencegateways.org/#/home/6795022613960724966-242ac11b-0001-012
• Access source catalog: https://catalog.sciencegateways.org/#/home

SETI@home is a scientific experiment, based at UC Berkeley, that uses Internet-connected computers in the Search for Extraterrestrial Intelligence (SETI). You can participate by running a free program that downloads and analyzes radio telescope data.

Related Science Gateway resources:

• Go to Science Gateway: http://setiathome.berkeley.edu/
• View in source catalog: https://catalog.sciencegateways.org/#/home/6794335419193364966-242ac11b-0001-012
• Access source catalog: https://catalog.sciencegateways.org/#/home

Models protein folding using Anfinsen's dogma

Related Science Gateway resources:

• Go to Science Gateway: http://boinc.fzk.de/
• View in source catalog: https://catalog.sciencegateways.org/#/home/6788107716614164966-242ac11b-0001-012
• Access source catalog: https://catalog.sciencegateways.org/#/home

Einstein@Home is a program that uses your computer's idle time to search for gravitational waves from spinning isolated compact objects (among which are pulsars) using data from the LIGO gravitational wave detector.

Related Science Gateway resources:

• Go to Science Gateway: https://einsteinathome.org/
• View in source catalog: https://catalog.sciencegateways.org/#/home/6786733327079444966-242ac11b-0001-012
• Access source catalog: https://catalog.sciencegateways.org/#/home

The PTP project provides an integrated development environment to support the development of parallel applications written in C, C++, and Fortran

Related Science Gateway resources:

• Go to Science Gateway: http://www.eclipse.org/ptp/
• View in source catalog: https://catalog.sciencegateways.org/#/home/6765945685366804966-242ac11b-0001-012
• Access source catalog: https://catalog.sciencegateways.org/#/home

Ocean Networks Canada operates world-leading ocean observatories for the advancement of science and the benefit of Canada. The observatories collect data on physical, chemical, biological, and geological aspects of the ocean over long time periods, supporting research on complex Earth processes in ways not previously possible. Associated Institutions:University of Victoria

Related Science Gateway resources:

• Go to Science Gateway: http://www.oceannetworks.ca/
• View in source catalog: https://catalog.sciencegateways.org/#/home/5036154134612087271-242ac11c-0001-012
• Access source catalog: https://catalog.sciencegateways.org/#/home

Giovanni is an online (Web) environment for the display and analysis of geophysical parameters in which the provenance (data lineage) can easily be accessed. Associated Institutions:NASA

Related Science Gateway resources:

• Go to Science Gateway: https://giovanni.gsfc.nasa.gov/giovanni/
• View in source catalog: https://catalog.sciencegateways.org/#/home/5727596315226804711-242ac11c-0001-012
• Access source catalog: https://catalog.sciencegateways.org/#/home

NEWT is bringing High Performance Computing (HPC) to the web through easy to write web applications. We think that writing applications for the web should be a simple task. We want to make HPC resources accessible and useful to scientists who are more comfortable with the web than they are with compilers, batch queues, or punched cards. Thanks to Web 2.0 APIs, we believe HPC can speak the same language as the web. Associated Institutions:NERSC

Related Science Gateway resources:

• Go to Science Gateway: https://newt.nersc.gov/
• View in source catalog: https://catalog.sciencegateways.org/#/home/5264908350116261400-242ac11c-0001-012
• Access source catalog: https://catalog.sciencegateways.org/#/home

The National eResearch Collaboration Tools and Resources project (Nectar) provides an online infrastructure that supports researchers to connect with colleagues in Australia and around the world, allowing them to collaborate and share ideas and research outcomes, which will ultimately contribute to our collective knowledge and make a significant impact on our society. Associated Institutions:University of Melbourne

Related Science Gateway resources:

• Go to Science Gateway: https://nectar.org.au/
• View in source catalog: https://catalog.sciencegateways.org/#/home/3271652720396407271-242ac11c-0001-012
• Access source catalog: https://catalog.sciencegateways.org/#/home

VectorBase is a National Institute of Allergy and Infectious Diseases (NIAID) Bioinformatics Resource Center (BRC) providing genomic, phenotypic and population-centric data to the scientific community for invertebrate vectors of human pathogens.

Related Science Gateway resources:

• Go to Science Gateway: https://www.vectorbase.org/
• View in source catalog: https://catalog.sciencegateways.org/#/home/409336912315879911-242ac11c-0001-012
• Access source catalog: https://catalog.sciencegateways.org/#/home

Plant Biosecurity is a set of measures designed to protect a crop, crops or a sub-group of crops from emergency plant pests at national, regional and individual farm levels. Associated Institutions:University of Canberra

Related Science Gateway resources:

• Go to Science Gateway: http://www.pbcrc.com.au/
• View in source catalog: https://catalog.sciencegateways.org/#/home/3229593445724525031-242ac11c-0001-012
• Access source catalog: https://catalog.sciencegateways.org/#/home

Crowdmap is a tool that allows you to crowdsource information and see it on a map and timeline. It is the Ushahidi platform, built by the team who created Ushahidi as a way for anyone to run their own crowdsourcing site without having to know the intricacies of running their own server. Associated Institutions:Ushahidi, Inc

Related Science Gateway resources:

• Go to Science Gateway: https://crowdmap.com/welcome
• View in source catalog: https://catalog.sciencegateways.org/#/home/3746164686685007385-242ac11c-0001-012
• Access source catalog: https://catalog.sciencegateways.org/#/home

HuNI combines data from many Australian cultural websites into the biggest humanities and creative arts database ever assembled in Australia. HuNI data covers all disciplines and brings together information about the people, works, events, organisations and places that make up the country's rich cultural landscape.

Related Science Gateway resources:

• Go to Science Gateway: https://huni.net.au/#/search
• View in source catalog: https://catalog.sciencegateways.org/#/home/3897416878587449831-242ac11b-0001-012
• Access source catalog: https://catalog.sciencegateways.org/#/home