| fftw Executable Software urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:131 fftw Version 3.3.9:gcc-10.1.0 |
| netcdf-fortran Executable Software urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:131 netcdf-fortran Version 4.5.3 |
| netcdf-cxx4 Executable Software urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:131 netcdf-cxx4 Version 4.3.1:intel-2020 |
| cuda Executable Software urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:131 cuda Version 11.1.1 |
| nvidia-hpc-sdk Executable Software urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:131 nvidia-hpc-sdk Version 2021.219 |
Pyspark-Ubuntu18.04-instance Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561
This image has python3, java8, scala, spark3, hadoop and jupyter notebook pre-installed for I535 AssignmentRelated Jetstream resources:
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Qiime2 toolkit Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561
QIIME2 Toolkit- Quantitative Insights into Microbial Ecology is an open-source bioinformatics pipeline for performing microbiome analysis from raw DNA sequencing data.Related Jetstream resources:
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IU-BL-I535-MGMT-DATA Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561
This is a VM for IU Bloomington class INFO I535 - Management, Access and Uses of Big Data.Related Jetstream resources:
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| PonyLinux Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561 |
DoaneBIO316_2020 Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561
Ubuntu 18.04 LTS + Xfce desktop, Anaconda Python 3.7, BiopythonRelated Jetstream resources:
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Frog Call Analysis Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561
HALF of workflow for bioacoustic analysis by Random Forest. Complete with minimalist documentationRelated Jetstream resources:
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Frog Call Analysis Secure Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561
HALF of workflow for bioacoustic analysis by Random Forest. *****Intermittent image to check for security holes.Related Jetstream resources:
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Bioacoustic Data Collection Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561
Workflow for collecting and visualizing data from a bioacoustic recording device to full visualization of R spectrograms in a Drupal website.Related Jetstream resources:
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bgRAMOSE - Genomics Software Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561
This image provides a platform for Brendel Group RAMOSE workflows for computational genomics.
Our RAMOSE philosophy and promise: we take every effort to design our workflows such that a user can generate reproducible, accurate, and meaningful results; our software is open (source), scalable, and easy to use (so that a typical genome laboratory team should be able to run it). And, of course, our software should be ramose (having many branches; see also the ramosa pathway in grass genomics ...) - it is yours to use, modify, improve, enhance, ...Related Jetstream resources:
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REUexercise1 Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561
This was an exercise for the REU Jetstream programRelated Jetstream resources:
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openmrs-base Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561
The base OpenMRS image for the CICI DynaSWAP projectRelated Jetstream resources:
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Ubuntu 18.04 for SOMOSPIE Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561
Apache Spark, Java, and various Python and R libraries pre-installed for SOMOSPIE (arXiv:1904.07754 [cs.LG]).Related Jetstream resources:
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Ubuntu 18.04 with Spark Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561
Ubuntu 18.04 with: Jupyter Notebook installed via ezj; Java 8 and Apache Spark installed in /usr/local; findspark, matplotlib, and pyspark installed with conda.
Built on Ubuntu 18.04 Devel and Docker v1.13 (by jfischer).Related Jetstream resources:
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vjc_ub1804_with_ezj_rstudio Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561
adds ezj and rstudio server to ubuntu 18.04 with dockerRelated Jetstream resources:
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WQmaker 2.31.9 with BUSCO Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561
Updated version of: maker 2.31.9 with CC tools v3.1. This image also contains BUSCO and hhmer to train AugustusRelated Jetstream resources:
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PonyLinux Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561
This image comes packed with a little game for learning Unix the fun way! Using ponysay and bash, this game walks you through the basics of command syntax, navigation, and dealing with files.Related Jetstream resources:
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Ubuntu Docker and Gsissh Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561
This image has Docker and gsissh installedRelated Jetstream resources:
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Base for Automated Frog ID Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561
This contains the base webpage, R packages, sample database on postgresql, and documentation for collecting data from Raspberry Pi recording devicesRelated Jetstream resources:
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Ciliates Popupjb Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561
Current Iteration of JBrowse image end of april 2019Related Jetstream resources:
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REU Project Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561
Friday 8 March 2019Related Jetstream resources:
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