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L1-3 SP Operational Components

Services

Interface NameInterface VersionResource IDService TypeURLQuality LevelServing StateCreation Time
org.globus.gram5.0.4-r1supermic.cct-lsu.xsede.orgComputingServicesmic1.hpc.lsu.edu:2119/productionproduction2018-12-17T10:18:10Z
org.globus.gridftp12.2stampede2.tacc.xsede.orgStorageServicegsiftp://gridftp.stampede2.tacc.xsede.org:2811/productionproduction2018-12-17T10:12:27Z
org.globus.gridftp12.2wrangler.tacc.xsede.orgStorageServicegsiftp://gridftp.wrangler.tacc.xsede.org:2811/productionproduction2018-12-17T10:20:19Z
org.globus.gridftp12.3bridges.psc.xsede.orgStorageServicegsiftp://gridftp.bridges.psc.edu:2811/productionproduction2018-12-17T10:11:15Z
org.globus.gridftp6.0.1supermic.cct-lsu.xsede.orgStorageServicegsiftp://smic1.hpc.lsu.edu:2811/productionproduction2018-12-17T10:18:10Z
org.globus.gridftp6.38comet-gpu.sdsc.xsede.orgStorageServicegsiftp://oasis-dm.sdsc.xsede.org:2811productionproduction2018-12-17T11:03:01Z
org.globus.gridftp6.38comet.sdsc.xsede.orgStorageServicegsiftp://oasis-dm.sdsc.xsede.org:2811productionproduction2018-12-17T11:03:01Z
org.globus.openssh5.9p1-hpn13v11comet-gpu.sdsc.xsede.orgLoginServicecomet.sdsc.xsede.org:22productionproduction2018-12-17T11:03:01Z
org.globus.openssh5.9p1-hpn13v11comet.sdsc.xsede.orgLoginServicecomet.sdsc.xsede.org:22productionproduction2018-12-17T11:03:01Z
org.globus.openssh7.1p2csupermic.cct-lsu.xsede.orgLoginServicesupermic.cct-lsu.xsede.org:2222productionproduction2018-12-17T10:18:10Z
org.globus.openssh7.5p1stampede2.tacc.xsede.orgLoginServicestampede2.tacc.xsede.org:2222productionproduction2018-12-17T10:12:27Z
org.globus.openssh7.5p1wrangler.tacc.xsede.orgLoginServicewrangler.tacc.xsede.org:2222productionproduction2018-12-17T10:20:19Z
org.globus.openssh7.5p1bbridges.psc.xsede.orgLoginServicebridges.psc.edu:2222productionproduction2018-12-17T10:11:15Z
org.xsede.mds-stopgap1.2supermic.cct-lsu.xsede.orgInformationServicesupermic.cct-lsu.xsede.orgproductionproduction2018-12-17T10:18:10Z

Software

App NameApp VersionResource IDDescriptionCreation Time
.1.8.1INTEL-14.0.2supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
.2.1INTEL-15.0.0supermic.cct-lsu.xsede.org2018-12-17T10:31:47Z
.2.10b2INTEL-14.0.2-ibverbssupermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
.2.10b2INTEL-14.0.2-ibverbs-micsupermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
.6.5INTEL-140-OPENMPI-1.8.1supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
.trunk-462INTEL-140-OPENMPI-1.8.4supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
0.1.19INTEL-14.0.2supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
0.2.8INTEL-14.0.2supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
0.35INTEL-14.0.2supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
0.7.4INTEL-14.0.2supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
0.9.10impi-4.1.3.048-intel64supermic.cct-lsu.xsede.org2018-12-17T10:31:47Z
0.9.10impi-4.1.3.048-intel64-micsupermic.cct-lsu.xsede.org2018-12-17T10:31:47Z
0.9.10mvapich2-2.0-INTEL-14.0.2supermic.cct-lsu.xsede.org2018-12-17T10:31:47Z
1.0.0INTEL-14.0.2supermic.cct-lsu.xsede.org2018-12-17T10:31:47Z
1.0.3INTEL-14.0.2supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
1.0.3INTEL-14.0.2supermic.cct-lsu.xsede.org2018-12-17T10:31:47Z
1.1.1INTEL-14.0.2supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
1.1.1INTEL-14.0.2supermic.cct-lsu.xsede.org2018-12-17T10:31:47Z
1.10.0INTEL-14.0.2supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
1.10.0INTEL-14.0.2-micsupermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
1.16INTEL-14.0.2supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
1.2.10INTEL-14.0.2supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
1.5.2INTEL-140-MVAPICH2-2.0supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
1.55.0INTEL-14.0.2supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
1.55.0INTEL-14.0.2-micsupermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
1.8.12INTEL-140-MVAPICH2-2.0supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
1.8.17INTEL-140-MVAPICH2-2.0supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
1.8.17intel-2018.0-impi-2018.0.128supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
1.8.4INTEL-14.0.2supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
1.9.0INTEL-140-MVAPICH2-2.0supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
14INTEL-140-MVAPICH2-2.0supermic.cct-lsu.xsede.org2018-12-17T10:31:47Z
16INTEL-140-MVAPICH2-2.0supermic.cct-lsu.xsede.org2018-12-17T10:31:47Z
1Feb14INTEL-140-MVAPICH2-2.0supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
2.0INTEL-14.0.2supermic.cct-lsu.xsede.org2018-12-17T10:31:47Z
2.0.2INTEL-14.0.2supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
2.0.2INTEL-140-MVAPICH2-2.0supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
2.0bINTEL-140-MVAPICH2-2.0supermic.cct-lsu.xsede.org2018-12-17T10:31:47Z
2.1GCC-4.9.0supermic.cct-lsu.xsede.org2018-12-17T10:31:47Z
2.1.0INTEL-14.0.2supermic.cct-lsu.xsede.org2018-12-17T10:31:47Z
2.1.0INTEL-14.0.2supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
2.10INTEL-14.0.2-ibverbssupermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
2.10INTEL-14.0.2-ibverbs-micsupermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
2.18.0INTEL-14.0.2supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
2.2.28INTEL-14.0.2supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
2.2.31INTEL-14.0.2supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
2.23.2INTEL-140-MVAPICH2-2.0supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
2.3.0INTEL-140-MVAPICH2-2.0supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
2.3.1INTEL-140-MVAPICH2-2.0supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
2.5.2GCC-4.9.0supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
2.7.7GCC-4.9.0supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
2.8.0bINTEL-140-MVAPICH2-2.0supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
2.8.12INTEL-14.0.2supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
2017.3.196intel64supermic.cct-lsu.xsede.org2018-12-17T10:31:47Z
2018.0.128intel64supermic.cct-lsu.xsede.org2018-12-17T10:31:47Z
21Jan15INTEL-14.0.2-impi-4.1.3.048-micsupermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
3.0.3INTEL-14.0.2supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
3.1.0INTEL-14.0.2supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
3.1.0INTEL-14.0.2supermic.cct-lsu.xsede.org2018-12-17T10:31:47Z
3.1.1INTEL-14.0.2supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
3.12.4GCC-4.9.0supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
3.1b1INTEL-14.0.2supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
3.2INTEL-140-OPENMPI-1.8.4supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
3.2.0INTEL-140-MVAPICH2-2.0supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
3.23INTEL-14.0.2supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
3.3.3INTEL-140-MVAPICH2-2.0supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
3.3.6INTEL-140-MVAPICH2-2.0supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
3.4.2INTEL-140-MVAPICH2-2.0supermic.cct-lsu.xsede.org2018-12-17T10:31:47Z
3.5.0-realINTEL-140-MVAPICH2-2.0supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
3.8.2INTEL-14.0.2supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
3.9.0GCC-4.9.0supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
4.0rc4GCC-4.9.0supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
4.1.3.048intel64supermic.cct-lsu.xsede.org2018-12-17T10:31:47Z
4.10.0INTEL-140-MVAPICH2-2.0supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
4.2INTEL-140-MVAPICH2-2.0supermic.cct-lsu.xsede.org2018-12-17T10:31:47Z
4.2.1.1INTEL-140-MVAPICH2-2.0supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
4.3.1GCC-4.9.0supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
4.3.1INTEL-140-MVAPICH2-2.0supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
4.5.0impi-2018.0.128supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
5.0INTEL-140-MVAPICH2-2.0supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
5.0.1.035intel64supermic.cct-lsu.xsede.org2018-12-17T10:31:47Z
5.0.7INTEL-140-OPENMPI-1.8.4supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
5.1.0INTEL-14.0.2supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
5.1.2INTEL-140-OPENMPI-1.8.4supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
5.1.4INTEL-140-MVAPICH2-2.0supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
5.16.3INTEL-14.0.2supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
5.2.1INTEL-14.0.2-mvapich-2.0supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
6.3INTEL-140-MVAPICH2-2.0supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
8.36INTEL-14.0.2supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
AIanaconda2-5.1.0_gpubridges.psc.xsede.org2018-12-17T10:32:45Z
AIanaconda3-5.1.0_gpubridges.psc.xsede.org2018-12-17T10:32:45Z
AIanaconda3-5.1.0_gpu.2018-08bridges.psc.xsede.org2018-12-17T10:32:45Z
AIPS31DEC16bridges.psc.xsede.org2018-12-17T10:32:45Z
Abinit7.10.5bridges.psc.xsede.org2018-12-17T10:32:45Z
Abinit8.0.8bbridges.psc.xsede.org2018-12-17T10:32:45Z
Abinit8.4.3bridges.psc.xsede.org2018-12-17T10:32:45Z
BerkeleyGW1.2.0bridges.psc.xsede.org2018-12-17T10:32:45Z
CFITSIO3380bridges.psc.xsede.org2018-12-17T10:32:45Z
CP2K4.1bridges.psc.xsede.org2018-12-17T10:32:45Z
CP2K5.1bridges.psc.xsede.org2018-12-17T10:32:45Z
EasyBuild1.11.1supermic.cct-lsu.xsede.org2018-12-17T10:31:47Z
EasyBuild1.13.0supermic.cct-lsu.xsede.org2018-12-17T10:31:47Z
GCC4.9.0supermic.cct-lsu.xsede.org2018-12-17T10:31:47Z
GPAW1.2.0bridges.psc.xsede.org2018-12-17T10:32:45Z
GenomeAnalysisTK3.5comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
GenomeAnalysisTK3.5comet.sdsc.xsede.org2018-12-17T10:01:02Z
GenomeAnalysisTK4.0.4.0comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
GenomeAnalysisTK4.0.4.0comet.sdsc.xsede.org2018-12-17T10:01:02Z
INTEL14.0.2supermic.cct-lsu.xsede.org2018-12-17T10:31:47Z
INTEL15.0.0supermic.cct-lsu.xsede.org2018-12-17T10:31:47Z
INTEL-140-MPICH3.1.1supermic.cct-lsu.xsede.org2018-12-17T10:31:47Z
INTEL-140-MVAPICH22.0supermic.cct-lsu.xsede.org2018-12-17T10:31:47Z
LAMMPSlammps-16Mar18bridges.psc.xsede.org2018-12-17T10:32:46Z
LAMMPSr14624bridges.psc.xsede.org2018-12-17T10:32:46Z
LAMMPSr15297bridges.psc.xsede.org2018-12-17T10:32:46Z
MAST2.0.0stampede2.tacc.xsede.orgMAST - MAterials Simulation Toolkit, Community Supported Software2018-12-17T10:25:31Z
Magma2.0.1bridges.psc.xsede.org2018-12-17T10:32:46Z
NucleoATAC0.3.1comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
NucleoATAC0.3.1comet.sdsc.xsede.org2018-12-17T10:01:02Z
Qt5.10.1bridges.psc.xsede.org2018-12-17T10:32:46Z
QuantumEspresso5.3.0bridges.psc.xsede.org2018-12-17T10:32:46Z
QuantumEspresso5.4.0bridges.psc.xsede.org2018-12-17T10:32:46Z
QuantumEspresso6.0.0bridges.psc.xsede.org2018-12-17T10:32:46Z
QuantumEspresso6.2.1bridges.psc.xsede.org2018-12-17T10:32:46Z
R3.2.3-mklbridges.psc.xsede.org2018-12-17T10:32:46Z
R3.3.1-mklbridges.psc.xsede.org2018-12-17T10:32:46Z
R3.3.3-mklbridges.psc.xsede.org2018-12-17T10:32:46Z
R3.4.0comet-gpu.sdsc.xsede.orgR2018-12-17T10:01:02Z
R3.4.0comet.sdsc.xsede.orgR2018-12-17T10:01:02Z
R3.4.1-mklbridges.psc.xsede.org2018-12-17T10:32:46Z
R3.5.1-mklbridges.psc.xsede.org2018-12-17T10:32:46Z
Rstats3.2.1wrangler.tacc.xsede.org2018-12-17T10:19:24Z
Rstats3.4.0stampede2.tacc.xsede.org2018-12-17T10:25:31Z
Rstats3.4.0wrangler.tacc.xsede.org2018-12-17T10:19:24Z
RstatsPackages3.2.1wrangler.tacc.xsede.org2018-12-17T10:19:24Z
RstatsPackages3.4.0stampede2.tacc.xsede.org2018-12-17T10:25:31Z
RstatsPackages3.4.0wrangler.tacc.xsede.org2018-12-17T10:19:24Z
Rstudio0.99.473wrangler.tacc.xsede.orgPowerful IDE for R2018-12-17T10:19:24Z
Rstudio0.99.903wrangler.tacc.xsede.orgPowerful IDE for R2018-12-17T10:19:24Z
Rstudio1.0.153stampede2.tacc.xsede.orgPowerful IDE for R2018-12-17T10:25:31Z
Rstudio1.0.153wrangler.tacc.xsede.orgPowerful IDE for R2018-12-17T10:19:24Z
RstudioDesktop1.1.423wrangler.tacc.xsede.orgPowerful IDE for R2018-12-17T10:19:24Z
SOAPsnp1.03comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
SOAPsnp1.03comet.sdsc.xsede.org2018-12-17T10:01:02Z
Siesta4.0b-485bridges.psc.xsede.org2018-12-17T10:32:46Z
Singular4.1.0bridges.psc.xsede.org2018-12-17T10:32:46Z
Trilinos12.12bridges.psc.xsede.org2018-12-17T10:32:46Z
ViennaRNA2.2.4comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
ViennaRNA2.2.4comet.sdsc.xsede.org2018-12-17T10:01:02Z
abaqus2016bridges.psc.xsede.org2018-12-17T10:32:45Z
abaqus2017bridges.psc.xsede.org2018-12-17T10:32:45Z
abaqus6.11-2comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
abaqus6.11-2comet.sdsc.xsede.org2018-12-17T10:01:02Z
abaqus6.14-1comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
abaqus6.14-1comet.sdsc.xsede.org2018-12-17T10:01:02Z
abinit8.4.2comet-gpu.sdsc.xsede.orgcalculates electronic structure properties within Density Functional Theory (DFT), using pseudopotentials and a planewave or wavelet basis.2018-12-17T10:01:02Z
abinit8.4.2comet.sdsc.xsede.orgcalculates electronic structure properties within Density Functional Theory (DFT), using pseudopotentials and a planewave or wavelet basis.2018-12-17T10:01:02Z
abyss1.5.2bridges.psc.xsede.orgABySS is a de novo sequence assembler intended for short paired-end reads and large genomes.2018-12-17T10:32:45Z
abyss1.9.0bridges.psc.xsede.orgABySS is a de novo sequence assembler intended for short paired-end reads and large genomes.2018-12-17T10:32:45Z
abyss2.0.2bridges.psc.xsede.orgABySS is a de novo sequence assembler intended for short paired-end reads and large genomes.2018-12-17T10:32:45Z
abyss2.0.2comet-gpu.sdsc.xsede.orgabyss2018-12-17T10:01:02Z
abyss2.0.2comet.sdsc.xsede.orgabyss2018-12-17T10:01:02Z
advisor18.0.2stampede2.tacc.xsede.orgIntel Advisor2018-12-17T10:25:31Z
allpaths-lg52488bridges.psc.xsede.orgA short read assembler.2018-12-17T10:32:45Z
amask1.0stampede2.tacc.xsede.org2018-12-17T10:25:31Z
amber16comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
amber16comet.sdsc.xsede.org2018-12-17T10:01:02Z
amber16.0stampede2.tacc.xsede.orgAmber Toolkit and parallel modules.2018-12-17T10:25:31Z
amber18comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
amber18comet.sdsc.xsede.org2018-12-17T10:01:02Z
anaconda4.0bridges.psc.xsede.org2018-12-17T10:32:45Z
anaconda4.2.0-3.5.2bridges.psc.xsede.org2018-12-17T10:32:45Z
anaconda25.1.0bridges.psc.xsede.org2018-12-17T10:32:45Z
anaconda25.2.0bridges.psc.xsede.org2018-12-17T10:32:45Z
anaconda35.1.0bridges.psc.xsede.org2018-12-17T10:32:45Z
anaconda35.2.0bridges.psc.xsede.org2018-12-17T10:32:45Z
anaconda55.0.0-3.6bridges.psc.xsede.org2018-12-17T10:32:45Z
annovar2016.02.01bridges.psc.xsede.org2018-12-17T10:32:45Z
ansys15.0supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
ansys16.0supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
ansys17.0supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
ansys17.1bridges.psc.xsede.orgANSYS is a general purpose finite element modeling package. It includes ANSYS Multiphysics and Fluent.2018-12-17T10:32:45Z
ansys18.1supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
ansys18.2bridges.psc.xsede.org2018-12-17T10:32:45Z
ansys19.2bridges.psc.xsede.org2018-12-17T10:32:45Z
ant1.9.4supermic.cct-lsu.xsede.orgApache Ant is a Java library and command-line tool whose mission is to drive processes described in build files as targets and extension points dependent upon each other. The main known usage of Ant is the build of Java applications.2018-12-17T10:31:47Z
anvio2.0.2bridges.psc.xsede.orgAnvi'o is an analysis and visualization platform for 'omics data.2018-12-17T10:32:45Z
anvio2.2.2bridges.psc.xsede.orgAnvi'o is an analysis and visualization platform for 'omics data.2018-12-17T10:32:45Z
anvio2.3.1bridges.psc.xsede.orgAnvi'o is an analysis and visualization platform for 'omics data.2018-12-17T10:32:45Z
anvio2.3.2bridges.psc.xsede.orgAnvi'o is an analysis and visualization platform for 'omics data.2018-12-17T10:32:45Z
anvio2.4.0bridges.psc.xsede.orgAnvi'o is an analysis and visualization platform for 'omics data.2018-12-17T10:32:45Z
anvio3bridges.psc.xsede.orgAnvi'o is an analysis and visualization platform for 'omics data.2018-12-17T10:32:45Z
apache-maven3.2.2wrangler.tacc.xsede.org2018-12-17T10:19:24Z
apbs1.5comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
apbs1.5comet.sdsc.xsede.org2018-12-17T10:01:02Z
aragorn1.2.38bridges.psc.xsede.orgARAGORN detects tRNA, mtRNA, and tmRNA genes.2018-12-17T10:32:45Z
arpack3.1.4stampede2.tacc.xsede.orgeigenvalue computations based on restarted Arnoldi method2018-12-17T10:25:31Z
aspera3.6.2bridges.psc.xsede.org2018-12-17T10:32:45Z
aspera-connect3.6.1.110647stampede2.tacc.xsede.orgAspera Connect client2018-12-17T10:25:31Z
aspera-connect3.6.1.110647wrangler.tacc.xsede.orgAspera Connect client2018-12-17T10:19:24Z
atlas3.10.2bridges.psc.xsede.org2018-12-17T10:32:45Z
atlas3.10.2comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
atlas3.10.2comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
atlas3.10.2comet.sdsc.xsede.org2018-12-17T10:01:02Z
atlas3.10.2comet.sdsc.xsede.org2018-12-17T10:01:02Z
augustus3.2.2bridges.psc.xsede.org2018-12-17T10:32:45Z
autodock4.2.6bridges.psc.xsede.org2018-12-17T10:32:45Z
autodock_vina1.1.2stampede2.tacc.xsede.orgAutoDock Vina is an open-source program for doing molecular docking2018-12-17T10:25:31Z
autotools1.1stampede2.tacc.xsede.org2018-12-17T10:25:31Z
autotools1.1wrangler.tacc.xsede.orgDeveloper utilities2018-12-17T10:19:24Z
bamtools2.4.0bridges.psc.xsede.org2018-12-17T10:32:45Z
bamtools2.4.0comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
bamtools2.4.0comet.sdsc.xsede.org2018-12-17T10:01:02Z
barrnap0.6bridges.psc.xsede.orgBarrnap predicts the location of ribosomal RNA genes in genomes.2018-12-17T10:32:45Z
basemap1.1.0stampede2.tacc.xsede.orgPlot 2D data on maps in Python2018-12-17T10:25:31Z
bazel0.10.0bridges.psc.xsede.org2018-12-17T10:32:45Z
bazel0.13.0bridges.psc.xsede.org2018-12-17T10:32:45Z
bazel0.3.1bridges.psc.xsede.org2018-12-17T10:32:45Z
bazel0.3.2bridges.psc.xsede.org2018-12-17T10:32:45Z
bazel0.4.1bridges.psc.xsede.org2018-12-17T10:32:45Z
bazel0.4.5bridges.psc.xsede.org2018-12-17T10:32:45Z
bazel0.5.1bridges.psc.xsede.org2018-12-17T10:32:45Z
bazel0.9.0bridges.psc.xsede.org2018-12-17T10:32:45Z
bbcp14.09.02.00.0comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
bbcp14.09.02.00.0comet.sdsc.xsede.org2018-12-17T10:01:02Z
bbcp15.02.03supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
bbftp3.2.1comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
bbftp3.2.1comet.sdsc.xsede.org2018-12-17T10:01:02Z
bcftools0.1.19bridges.psc.xsede.orgUtilities for variant calling and manipulating VCFs and BCFs.2018-12-17T10:32:45Z
bcftools1.3comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
bcftools1.3comet.sdsc.xsede.org2018-12-17T10:01:02Z
bcftools1.3.1bridges.psc.xsede.orgUtilities for variant calling and manipulating VCFs and BCFs.2018-12-17T10:32:45Z
beagle2.1comet-gpu.sdsc.xsede.orgbeagle2018-12-17T10:01:02Z
beagle2.1comet.sdsc.xsede.orgbeagle2018-12-17T10:01:02Z
beast1.7.5supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
beast1.8.0comet-gpu.sdsc.xsede.orgbeast2018-12-17T10:01:02Z
beast1.8.0comet.sdsc.xsede.orgbeast2018-12-17T10:01:02Z
beast1.8.1comet-gpu.sdsc.xsede.orgbeast2018-12-17T10:01:02Z
beast1.8.1comet.sdsc.xsede.orgbeast2018-12-17T10:01:02Z
beast1.8.2comet-gpu.sdsc.xsede.orgbeast2018-12-17T10:01:02Z
beast1.8.2comet.sdsc.xsede.orgbeast2018-12-17T10:01:02Z
beast22.1.3comet-gpu.sdsc.xsede.orgbeast22018-12-17T10:01:02Z
beast22.1.3comet.sdsc.xsede.orgbeast22018-12-17T10:01:02Z
bedops2.4.19bridges.psc.xsede.org2018-12-17T10:32:45Z
bedops2.4.35bridges.psc.xsede.orgBEDOPS is an open-source command-line toolkit that performs highly efficient and scalable Boolean and other set operations, statistical calculations, archiving, conversion and other management of genomic data of arbitrary scale. Tasks can be easily split by chromosome for distributing whole-genome analyses across a computational cluster.2018-12-17T10:32:45Z
bedtools2.25.0bridges.psc.xsede.org2018-12-17T10:32:45Z
bedtools2.25.0comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
bedtools2.25.0comet.sdsc.xsede.org2018-12-17T10:01:02Z
bedtools2.25.0wrangler.tacc.xsede.orgbedtools: a flexible suite of utilities for comparing genomic features2018-12-17T10:19:24Z
bedtools2.26.0stampede2.tacc.xsede.orgA powerful toolset for genome arithmetic2018-12-17T10:25:31Z
big-data-r3.2.1wrangler.tacc.xsede.orgbig data R packages2018-12-17T10:19:24Z
bioperl1.007002comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
bioperl1.007002comet.sdsc.xsede.org2018-12-17T10:01:02Z
biopython1.66comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
biopython1.66comet.sdsc.xsede.org2018-12-17T10:01:02Z
bismark0.15.0comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
bismark0.15.0comet.sdsc.xsede.org2018-12-17T10:01:02Z
bismark0.18.1stampede2.tacc.xsede.orgBismark is a program to map bisulfite treated sequencing reads to a genome of interest and perform methylation calls in a single step2018-12-17T10:25:31Z
bismark0.19.0bridges.psc.xsede.orgA bisulfite read mapper and methylation caller.2018-12-17T10:32:45Z
blasr1.3.1bridges.psc.xsede.org2018-12-17T10:32:45Z
blast2.2.22supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
blast2.2.31bridges.psc.xsede.orgBLAST is a search tool that finds regions of local similarity between nucleotide or protein sequences2018-12-17T10:32:45Z
blast2.3.0comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
blast2.3.0comet.sdsc.xsede.org2018-12-17T10:01:02Z
blast2.6.0bridges.psc.xsede.orgBLAST is a search tool that finds regions of local similarity between nucleotide or protein sequences2018-12-17T10:32:45Z
blast2.6.0stampede2.tacc.xsede.orgNCBI BLAST+ sequence alignment package2018-12-17T10:25:31Z
blast2.7.1bridges.psc.xsede.orgBLAST is a search tool that finds regions of local similarity between nucleotide or protein sequences2018-12-17T10:32:45Z
blat35comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
blat35comet.sdsc.xsede.org2018-12-17T10:01:02Z
blatv35bridges.psc.xsede.org2018-12-17T10:32:45Z
blis0.2.2astampede2.tacc.xsede.orgBLAS-like Library Instantiation Software2018-12-17T10:25:31Z
boost1.50.0bridges.psc.xsede.org2018-12-17T10:32:45Z
boost1.55.0comet-gpu.sdsc.xsede.orgboost2018-12-17T10:01:02Z
boost1.55.0comet-gpu.sdsc.xsede.orgboost2018-12-17T10:01:02Z
boost1.55.0comet.sdsc.xsede.orgboost2018-12-17T10:01:02Z
boost1.55.0comet.sdsc.xsede.orgboost2018-12-17T10:01:02Z
boost1.55.0wrangler.tacc.xsede.orgBoost provides free peer-reviewed portable C++ source libraries (Serial Version).2018-12-17T10:19:24Z
boost1.60.0bridges.psc.xsede.org2018-12-17T10:32:45Z
boost1.60.0_gnu_openmpibridges.psc.xsede.org2018-12-17T10:32:45Z
boost1.60.0_py2.7.11bridges.psc.xsede.org2018-12-17T10:32:45Z
boost1.61.0_py2.7.11bridges.psc.xsede.org2018-12-17T10:32:45Z
boost1.63.0_py2.7.11bridges.psc.xsede.org2018-12-17T10:32:45Z
boost1.64stampede2.tacc.xsede.orgBoost provides free peer-reviewed portable C++ source libraries.2018-12-17T10:25:31Z
boost1.66.0_py2.7.14_gcc5bridges.psc.xsede.org2018-12-17T10:32:45Z
boost1.68stampede2.tacc.xsede.orgBoost provides free peer-reviewed portable C++ source libraries.2018-12-17T10:25:31Z
bowtie1.1.1bridges.psc.xsede.orgA sequence aligner for short reads.2018-12-17T10:32:45Z
bowtie1.1.2bridges.psc.xsede.orgA sequence aligner for short reads.2018-12-17T10:32:45Z
bowtie1.1.2comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
bowtie1.1.2comet.sdsc.xsede.org2018-12-17T10:01:02Z
bowtie1.2.1.1stampede2.tacc.xsede.orgMemory-efficient short read (NGS) aligner2018-12-17T10:25:31Z
bowtie2.3.2stampede2.tacc.xsede.orgMemory-efficient short read (NGS) aligner2018-12-17T10:25:31Z
bowtie2.3.4wrangler.tacc.xsede.orgMemory-efficient short read (NGS) aligner2018-12-17T10:19:24Z
bowtie22.2.7bridges.psc.xsede.orgA tool for aligning sequence reads to long reference sequences.2018-12-17T10:32:45Z
bowtie22.2.7comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
bowtie22.2.7comet.sdsc.xsede.org2018-12-17T10:01:02Z
bowtie22.3.4.1bridges.psc.xsede.orgA tool for aligning sequence reads to long reference sequences.2018-12-17T10:32:45Z
bsmap2.91wrangler.tacc.xsede.orgBSMAP - short reads mapping software for bisulfite sequencing reads2018-12-17T10:19:24Z
bsmap2.92stampede2.tacc.xsede.orgBSMAP for Methylation2018-12-17T10:25:31Z
busco1.22bridges.psc.xsede.org2018-12-17T10:32:45Z
bwa0.7.13bridges.psc.xsede.org2018-12-17T10:32:45Z
bwa0.7.13comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
bwa0.7.13comet.sdsc.xsede.org2018-12-17T10:01:02Z
bwa0.7.16astampede2.tacc.xsede.orgBurrow-Wheeler Aligner for pairwise alignment between DNA sequences2018-12-17T10:25:31Z
bx-python0.8.1comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
bx-python0.8.1comet.sdsc.xsede.org2018-12-17T10:01:02Z
caffe1.0.3stampede2.tacc.xsede.org2018-12-17T10:25:31Z
caffe1.1.1stampede2.tacc.xsede.org2018-12-17T10:25:31Z
caffegit_2c34393fbridges.psc.xsede.org2018-12-17T10:32:45Z
caffegit_be163be0bridges.psc.xsede.org2018-12-17T10:32:45Z
caffegit_erictzeng_5ca549ce2bridges.psc.xsede.org2018-12-17T10:32:45Z
caffegit_master_HEADbridges.psc.xsede.org2018-12-17T10:32:45Z
caffe20.7.0bridges.psc.xsede.org2018-12-17T10:32:45Z
caffe2git_master_HEADbridges.psc.xsede.org2018-12-17T10:32:45Z
canu1.3bridges.psc.xsede.org2018-12-17T10:32:45Z
canu1.5bridges.psc.xsede.org2018-12-17T10:32:45Z
canu1.6bridges.psc.xsede.org2018-12-17T10:32:45Z
canu1.7bridges.psc.xsede.orgA fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio or Oxford Nanopore)2018-12-17T10:32:45Z
canu1.7stampede2.tacc.xsede.orgCanu is a fork of the Celera Assembler designed for high-noise single-molecule sequencing (such as the PacBio RSII or Oxford Nanopore MinION)2018-12-17T10:25:31Z
cd-hit2016.06.21bridges.psc.xsede.org2018-12-17T10:32:45Z
cd-hit4.6.4wrangler.tacc.xsede.orgClustering DNA/protein sequence database at high identity with tolerance.2018-12-17T10:19:24Z
cdbfasta2013bridges.psc.xsede.org2018-12-17T10:32:45Z
celera8.3rc2comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
celera8.3rc2comet.sdsc.xsede.org2018-12-17T10:01:02Z
centrifuge1.0.3-betabridges.psc.xsede.orgClassifier for metagenomic sequences2018-12-17T10:32:45Z
centrifuge1.0.4-betabridges.psc.xsede.orgClassifier for metagenomic sequences2018-12-17T10:32:45Z
cfourv1bridges.psc.xsede.org2018-12-17T10:32:45Z
chainer1.24.0bridges.psc.xsede.org2018-12-17T10:32:45Z
charmmMPIbridges.psc.xsede.org2018-12-17T10:32:45Z
checkm1.0.7bridges.psc.xsede.orgA set of tools for assessing the quality of genomes recovered from isolates, single cells, or metagenomes.2018-12-17T10:32:45Z
chemtoolkit1.0.0stampede2.tacc.xsede.orgComputational chemistry tools2018-12-17T10:25:31Z
cilk5.4.6comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
cilk5.4.6comet.sdsc.xsede.org2018-12-17T10:01:02Z
circos0.69.2bridges.psc.xsede.orgA package for visualizing data in a circular layout. Commonly used to visualize genome data.2018-12-17T10:32:45Z
cmake3.10.2stampede2.tacc.xsede.orgtool for generation of files from source2018-12-17T10:25:31Z
cmake3.10.2wrangler.tacc.xsede.orgtool for generation of files from source2018-12-17T10:19:24Z
cmake3.11.4bridges.psc.xsede.org2018-12-17T10:32:45Z
cmake3.5.2bridges.psc.xsede.org2018-12-17T10:32:45Z
cmake3.6.0wrangler.tacc.xsede.orgtool for generation of files from source2018-12-17T10:19:24Z
cmake3.7.1stampede2.tacc.xsede.orgtool for generation of files from source2018-12-17T10:25:31Z
cmake3.7.1wrangler.tacc.xsede.orgtool for generation of files from source2018-12-17T10:19:24Z
cmake3.7.2bridges.psc.xsede.org2018-12-17T10:32:45Z
cmake3.8.2stampede2.tacc.xsede.orgtool for generation of files from source2018-12-17T10:25:31Z
cmake3.9.1comet-gpu.sdsc.xsede.orgopen-source build system2018-12-17T10:01:02Z
cmake3.9.1comet.sdsc.xsede.orgopen-source build system2018-12-17T10:01:02Z
cnvkit0.9.2bridges.psc.xsede.orgA command-line toolkit and Python library for detecting copy number variants and alterations genome-wide from high-throughput sequencing.2018-12-17T10:32:45Z
cp2k4.1comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
cp2k4.1comet.sdsc.xsede.org2018-12-17T10:01:02Z
cpmd3.17.1comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
cpmd3.17.1comet.sdsc.xsede.org2018-12-17T10:01:02Z
cuda10.0bridges.psc.xsede.org2018-12-17T10:32:45Z
cuda6.0supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
cuda6.5comet-gpu.sdsc.xsede.orgCUDA GPU programming utilities2018-12-17T10:01:02Z
cuda6.5comet.sdsc.xsede.orgCUDA GPU programming utilities2018-12-17T10:01:02Z
cuda6.5supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
cuda7.0comet-gpu.sdsc.xsede.orgCUDA GPU programming utilities2018-12-17T10:01:02Z
cuda7.0comet.sdsc.xsede.orgCUDA GPU programming utilities2018-12-17T10:01:02Z
cuda7.5bridges.psc.xsede.org2018-12-17T10:32:45Z
cuda7.5comet-gpu.sdsc.xsede.orgCUDA GPU programming utilities2018-12-17T10:01:02Z
cuda7.5comet.sdsc.xsede.orgCUDA GPU programming utilities2018-12-17T10:01:02Z
cuda7.5supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
cuda8.0bridges.psc.xsede.org2018-12-17T10:32:45Z
cuda8.0comet-gpu.sdsc.xsede.orgCUDA GPU programming utilities2018-12-17T10:01:02Z
cuda8.0comet.sdsc.xsede.orgCUDA GPU programming utilities2018-12-17T10:01:02Z
cuda8.0supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
cuda8.0RCbridges.psc.xsede.org2018-12-17T10:32:45Z
cuda9.0bridges.psc.xsede.org2018-12-17T10:32:45Z
cuda9.0RCbridges.psc.xsede.org2018-12-17T10:32:45Z
cuda9.2bridges.psc.xsede.org2018-12-17T10:32:45Z
cuda9.2comet-gpu.sdsc.xsede.orgCUDA GPU programming utilities2018-12-17T10:01:02Z
cuda9.2comet.sdsc.xsede.orgCUDA GPU programming utilities2018-12-17T10:01:02Z
cue-login-env1.0bridges.psc.xsede.orgXSEDE Common User Environment CUE_* shell environment variables2018-12-17T10:32:45Z
cufflinks2.1.1supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
cufflinks2.2.1bridges.psc.xsede.org2018-12-17T10:32:45Z
cufflinks2.2.1comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
cufflinks2.2.1comet.sdsc.xsede.org2018-12-17T10:01:02Z
cufflinks2.2.1stampede2.tacc.xsede.orgCufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples2018-12-17T10:25:31Z
cutadapt1.14stampede2.tacc.xsede.orgTrim adapters from high-throughput sequencing reads2018-12-17T10:25:31Z
cutadapt1.16bridges.psc.xsede.orgcutadapt: Reads a FASTA or FASTQ file, finds and removes adapters, and writes the changed sequence to standard output.2018-12-17T10:32:45Z
cutadapt1.5bridges.psc.xsede.orgcutadapt: Reads a FASTA or FASTQ file, finds and removes adapters, and writes the changed sequence to standard output.2018-12-17T10:32:45Z
cxx114.9.1wrangler.tacc.xsede.org2018-12-17T10:19:24Z
cyverse-irods-icommands4.1.10bridges.psc.xsede.orgCyVerse iRODS iCommands2018-12-17T10:32:45Z
dakota6.6.0stampede2.tacc.xsede.orgDakota toolkit provides a flexible, extensible interface between analysis codes and iterative systems analysis methods2018-12-17T10:25:31Z
dammit0.3bridges.psc.xsede.orgdammit is a simple de novo transcriptome annotator.2018-12-17T10:32:45Z
ddt18.1.3stampede2.tacc.xsede.orgParallel, graphical, symbolic debugger2018-12-17T10:25:31Z
ddt4.2.1supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
ddt6.0.2bridges.psc.xsede.org2018-12-17T10:32:45Z
ddt7.0bridges.psc.xsede.org2018-12-17T10:32:45Z
ddt7.0.3stampede2.tacc.xsede.orgParallel, graphical, symbolic debugger2018-12-17T10:25:31Z
ddt7.1comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
ddt7.1comet.sdsc.xsede.org2018-12-17T10:01:02Z
dealiigit20170615stampede2.tacc.xsede.orgPortable Extendible Toolkit for Scientific Computing, Numerical library for sparse linear algebra2018-12-17T10:25:31Z
deeptools2.3.5bridges.psc.xsede.orgdeepTools is a suite of python tools developed for analysis of high-througput sequencing data2018-12-17T10:32:45Z
deeptools3.1.0stampede2.tacc.xsede.orgUser-friendly tools for exploring deep-sequencing data2018-12-17T10:25:31Z
dendropy4.0.3comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
dendropy4.0.3comet.sdsc.xsede.org2018-12-17T10:01:02Z
desmond2016.1bridges.psc.xsede.org2018-12-17T10:32:45Z
detonate1.10bridges.psc.xsede.org2018-12-17T10:32:45Z
diamond0.7.11bridges.psc.xsede.org2018-12-17T10:32:45Z
diamond0.7.12comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
diamond0.7.12comet.sdsc.xsede.org2018-12-17T10:01:02Z
diamond0.8.31bridges.psc.xsede.orgDiamond; A fast blastx/blastp replacement for metagenomics.2018-12-17T10:32:45Z
discovar52488bridges.psc.xsede.org2018-12-17T10:32:45Z
discovardenovo52488bridges.psc.xsede.org2018-12-17T10:32:45Z
dock6.8stampede2.tacc.xsede.orgDOCK is a structure-based small molecule docking tool2018-12-17T10:25:31Z
drive-data6.2comet-gpu.sdsc.xsede.orgdrive-data2018-12-17T10:01:02Z
drive-data6.2comet.sdsc.xsede.orgdrive-data2018-12-17T10:01:02Z
ectools2014-12-01bridges.psc.xsede.org2018-12-17T10:32:45Z
edena3.131028comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
edena3.131028comet.sdsc.xsede.org2018-12-17T10:01:02Z
eigen3.2.7comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
eigen3.2.7comet.sdsc.xsede.org2018-12-17T10:01:02Z
eigen3.2.8bridges.psc.xsede.org2018-12-17T10:32:45Z
eigen3.3.4bridges.psc.xsede.org2018-12-17T10:32:45Z
elemental0.87-Debugstampede2.tacc.xsede.orgLibrary for distributed dense linear algebra2018-12-17T10:25:31Z
elemental0.87-Releasestampede2.tacc.xsede.orgLibrary for distributed dense linear algebra2018-12-17T10:25:31Z
elph1.0.1bridges.psc.xsede.orgELPH is a general-purpose Gibbs sampler for finding motifs in a set of DNA or protein sequences.2018-12-17T10:32:45Z
emacs26.1bridges.psc.xsede.org2018-12-17T10:32:45Z
eman2.2stampede2.tacc.xsede.orgEMAN2 is a scientific image processing suite for single particle reconstruction from cryoEM2018-12-17T10:25:31Z
eman22.1comet-gpu.sdsc.xsede.orgeman22018-12-17T10:01:02Z
eman22.1comet.sdsc.xsede.orgeman22018-12-17T10:01:02Z
emboss6.5.7comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
emboss6.5.7comet.sdsc.xsede.org2018-12-17T10:01:02Z
emboss6.6.0bridges.psc.xsede.org2018-12-17T10:32:45Z
ericscript0.5.5bridges.psc.xsede.org2018-12-17T10:32:45Z
exonerate2.4.0bridges.psc.xsede.org2018-12-17T10:32:45Z
falcon0.4.1bridges.psc.xsede.org2018-12-17T10:32:45Z
fasta-splitter0.2.4bridges.psc.xsede.org2018-12-17T10:32:45Z
fastq-splitter0.1.2bridges.psc.xsede.org2018-12-17T10:32:45Z
fastqc0.11.3bridges.psc.xsede.org2018-12-17T10:32:45Z
fastqc0.11.4comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
fastqc0.11.4comet.sdsc.xsede.org2018-12-17T10:01:02Z
fastqc0.11.5stampede2.tacc.xsede.orgA quality control tool for high throughput sequence data2018-12-17T10:25:31Z
fasttree2.1.8comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
fasttree2.1.8comet.sdsc.xsede.org2018-12-17T10:01:02Z
fastx0.0.14bridges.psc.xsede.org2018-12-17T10:32:45Z
fastx0.0.14comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
fastx0.0.14comet.sdsc.xsede.org2018-12-17T10:01:02Z
fastx_toolkit0.0.14stampede2.tacc.xsede.orgCommand line tools for Short-Reads FASTA/FASTQ files preprocessing.2018-12-17T10:25:31Z
fenics2017decstampede2.tacc.xsede.orgFenics, finite element package2018-12-17T10:25:31Z
fenics2018maystampede2.tacc.xsede.orgFenics, finite element package2018-12-17T10:25:31Z
ffmpeg3.1.1bridges.psc.xsede.org2018-12-17T10:32:45Z
fftw2.1.5comet-gpu.sdsc.xsede.orgfftw2018-12-17T10:01:02Z
fftw2.1.5comet-gpu.sdsc.xsede.orgfftw2018-12-17T10:01:02Z
fftw2.1.5comet-gpu.sdsc.xsede.orgfftw2018-12-17T10:01:02Z
fftw2.1.5comet.sdsc.xsede.orgfftw2018-12-17T10:01:02Z
fftw2.1.5comet.sdsc.xsede.orgfftw2018-12-17T10:01:02Z
fftw2.1.5comet.sdsc.xsede.orgfftw2018-12-17T10:01:02Z
fftw3.3.4comet-gpu.sdsc.xsede.orgfftw2018-12-17T10:01:02Z
fftw3.3.4comet-gpu.sdsc.xsede.orgfftw2018-12-17T10:01:02Z
fftw3.3.4comet-gpu.sdsc.xsede.orgfftw2018-12-17T10:01:02Z
fftw3.3.4comet.sdsc.xsede.orgfftw2018-12-17T10:01:02Z
fftw3.3.4comet.sdsc.xsede.orgfftw2018-12-17T10:01:02Z
fftw3.3.4comet.sdsc.xsede.orgfftw2018-12-17T10:01:02Z
fftw22.1.5stampede2.tacc.xsede.orgNumerical library, contains discrete Fourier transformation2018-12-17T10:25:31Z
fftw33.3.4bridges.psc.xsede.org2018-12-17T10:32:45Z
fftw33.3.4wrangler.tacc.xsede.orgNumerical library, contains discrete Fourier transformation2018-12-17T10:19:24Z
fftw33.3.6stampede2.tacc.xsede.orgNumerical library, contains discrete Fourier transformation2018-12-17T10:25:31Z
flash1.2.11bridges.psc.xsede.org2018-12-17T10:32:45Z
flex2.6.0bridges.psc.xsede.org2018-12-17T10:32:45Z
fluentfluentbridges.psc.xsede.orgFluent is part of ANSYS. Load the ANSYS module to have access to Fluent.2018-12-17T10:32:45Z
fraggenescan1.20bridges.psc.xsede.org2018-12-17T10:32:45Z
frealign9.11comet-gpu.sdsc.xsede.orgfrealign2018-12-17T10:01:02Z
frealign9.11comet.sdsc.xsede.orgfrealign2018-12-17T10:01:02Z
fsa1.15.9comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
fsa1.15.9comet.sdsc.xsede.org2018-12-17T10:01:02Z
ftools6.18bridges.psc.xsede.org2018-12-17T10:32:45Z
gamess2017.04comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
gamess2017.04comet.sdsc.xsede.org2018-12-17T10:01:02Z
gamessV2014bridges.psc.xsede.org2018-12-17T10:32:45Z
gamessV2018bridges.psc.xsede.org2018-12-17T10:32:45Z
garli2.01comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
garli2.01comet.sdsc.xsede.org2018-12-17T10:01:02Z
gateway-usage-reporting1.0supermic.cct-lsu.xsede.org2018-12-17T10:31:47Z
gateway-usage-reporting1.0wrangler.tacc.xsede.orgadds gateway-usage-reporting tool to paths in the login shell environment2018-12-17T10:19:24Z
gateway-usage-reporting2.0stampede2.tacc.xsede.orgadds gateway-usage-reporting tool to paths in the login shell environment2018-12-17T10:25:31Z
gateway-usage-reporting2.0supermic.cct-lsu.xsede.org2018-12-17T10:31:47Z
gateway-usage-reporting2.0wrangler.tacc.xsede.orgadds gateway-usage-reporting tool to paths in the login shell environment2018-12-17T10:19:24Z
gateway-usage-reporting2.1comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
gateway-usage-reporting2.1comet.sdsc.xsede.org2018-12-17T10:01:02Z
gateway_submit_attributes2.0bridges.psc.xsede.orgXSEDE gateway_submit_attributes client2018-12-17T10:32:45Z
gateway_submit_attributes2.0r3bridges.psc.xsede.orgXSEDE gateway_submit_attributes client2018-12-17T10:32:45Z
gatk3.5bridges.psc.xsede.orgA Genome Analysis Toolkit for variant discovery and genotyping.2018-12-17T10:32:45Z
gatk3.6bridges.psc.xsede.orgA Genome Analysis Toolkit for variant discovery and genotyping.2018-12-17T10:32:45Z
gatk3.7bridges.psc.xsede.orgA Genome Analysis Toolkit for variant discovery and genotyping.2018-12-17T10:32:45Z
gatk3.8bridges.psc.xsede.orgA Genome Analysis Toolkit for variant discovery and genotyping.2018-12-17T10:32:45Z
gatk3.8.0stampede2.tacc.xsede.orgThe Genome Analysis ToolKit is used to to analyze high-throughput sequencing data2018-12-17T10:25:31Z
gatk4.0.1.2bridges.psc.xsede.orgA Genome Analysis Toolkit for variant discovery and genotyping.2018-12-17T10:32:45Z
gatk4.beta.5bridges.psc.xsede.orgA Genome Analysis Toolkit for variant discovery and genotyping.2018-12-17T10:32:45Z
gaussian09.D.01bridges.psc.xsede.org2018-12-17T10:32:45Z
gaussian09.D.01comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
gaussian09.D.01comet.sdsc.xsede.org2018-12-17T10:01:02Z
gaussian09.E.01bridges.psc.xsede.org2018-12-17T10:32:45Z
gaussian16.B.01comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
gaussian16.B.01comet.sdsc.xsede.org2018-12-17T10:01:02Z
gaussian16rA.03stampede2.tacc.xsede.orgGaussian 16 quantum chemistry package2018-12-17T10:25:31Z
gaussianG16bridges.psc.xsede.org2018-12-17T10:32:45Z
gcc4.7.2bridges.psc.xsede.org2018-12-17T10:32:45Z
gcc4.8.4bridges.psc.xsede.org2018-12-17T10:32:45Z
gcc4.9.0supermic.cct-lsu.xsede.org2018-12-17T10:31:47Z
gcc4.9.1wrangler.tacc.xsede.org2018-12-17T10:19:24Z
gcc4.9.3wrangler.tacc.xsede.org2018-12-17T10:19:24Z
gcc5.3.0bridges.psc.xsede.org2018-12-17T10:32:45Z
gcc5.4.0stampede2.tacc.xsede.org2018-12-17T10:25:31Z
gcc6.3.0bridges.psc.xsede.org2018-12-17T10:32:45Z
gcc6.3.0stampede2.tacc.xsede.org2018-12-17T10:25:31Z
gcc6.3.0wrangler.tacc.xsede.org2018-12-17T10:19:24Z
gcc6.4.0supermic.cct-lsu.xsede.org2018-12-17T10:31:47Z
gcc7.1.0stampede2.tacc.xsede.org2018-12-17T10:25:31Z
gcc7.2.0bridges.psc.xsede.org2018-12-17T10:32:45Z
gcc7.3.0bridges.psc.xsede.org2018-12-17T10:32:45Z
gcc7.3.0stampede2.tacc.xsede.org2018-12-17T10:25:31Z
gcc7.3.0wrangler.tacc.xsede.org2018-12-17T10:19:24Z
gcc8.1.0bridges.psc.xsede.org2018-12-17T10:32:45Z
gcc8.2.0bridges.psc.xsede.org2018-12-17T10:32:45Z
gdal2.2.0comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
gdal2.2.0comet.sdsc.xsede.org2018-12-17T10:01:02Z
gdal2.2.1bridges.psc.xsede.orgTranslator library for raster and vector geospatial data formats2018-12-17T10:32:45Z
gdc-client1.3.0bridges.psc.xsede.orgTools for downloading data from the Genome Data Commons (GDC).2018-12-17T10:32:45Z
gdrcopy1.4bridges.psc.xsede.org2018-12-17T10:32:45Z
geant410.3.p02stampede2.tacc.xsede.orgGeant4 is a toolkit for the simulation of the passage of particles through matter2018-12-17T10:25:31Z
genome-music0.4.1bridges.psc.xsede.org2018-12-17T10:32:45Z
geos3.6.1comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
geos3.6.1comet.sdsc.xsede.org2018-12-17T10:01:02Z
gffread0.9.8cbridges.psc.xsede.orggffread - gffread can be used to validate, filter, convert and perform various other operations on GFF files2018-12-17T10:32:45Z
gflags2.2.0bridges.psc.xsede.org2018-12-17T10:32:45Z
git2.10.2bridges.psc.xsede.org2018-12-17T10:32:45Z
git2.4.1wrangler.tacc.xsede.orgFast Version Control System2018-12-17T10:19:24Z
git2.9.0stampede2.tacc.xsede.orgFast Version Control System2018-12-17T10:25:31Z
glimmer3.02bridges.psc.xsede.orgGlimmer is a system for finding genes in microbial DNA, especially the genomes of bacteria, archaea, and viruses.2018-12-17T10:32:45Z
glimmerhmm3.0.4bridges.psc.xsede.orgGlimmerHMM is a gene finder based on a Generalized Hidden Markov Model (GHMM)2018-12-17T10:32:45Z
globus5.0.4-r1supermic.cct-lsu.xsede.org2018-12-17T10:31:47Z
globus5.2.5comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
globus5.2.5comet.sdsc.xsede.org2018-12-17T10:01:02Z
globus5.7-8supermic.cct-lsu.xsede.org2018-12-17T10:31:47Z
globus6.0stampede2.tacc.xsede.orgGlobus Software Package2018-12-17T10:25:31Z
globus6.0supermic.cct-lsu.xsede.org2018-12-17T10:31:47Z
globus6.0wrangler.tacc.xsede.orgGlobus Software Package2018-12-17T10:19:24Z
glog0.3.5bridges.psc.xsede.org2018-12-17T10:32:45Z
gmap_gsnap20151231comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
gmap_gsnap20151231comet.sdsc.xsede.org2018-12-17T10:01:02Z
gmp6.0.0acomet-gpu.sdsc.xsede.orgGMP library2018-12-17T10:01:02Z
gmp6.0.0acomet.sdsc.xsede.orgGMP library2018-12-17T10:01:02Z
gmt5.3.3stampede2.tacc.xsede.orgGeneric Mapping Tools: Tools for manipulating geographic and Cartesian data sets2018-12-17T10:25:31Z
gnu4.9.2comet-gpu.sdsc.xsede.orgGNU compilers2018-12-17T10:01:02Z
gnu4.9.2comet.sdsc.xsede.orgGNU compilers2018-12-17T10:01:02Z
gnu_parallel20160822bridges.psc.xsede.orgGNU parallel is a shell tool for executing jobs in parallel using one or more computers.2018-12-17T10:32:45Z
gnubase2.69comet-gpu.sdsc.xsede.orgGNU tools2018-12-17T10:01:02Z
gnubase2.69comet.sdsc.xsede.orgGNU tools2018-12-17T10:01:02Z
gnuparallel20170122supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
gnuparallelgit20180620stampede2.tacc.xsede.orgGNU Parallel utility2018-12-17T10:25:31Z
gnutools2.69comet-gpu.sdsc.xsede.orgGNU tools2018-12-17T10:01:02Z
gnutools2.69comet.sdsc.xsede.orgGNU tools2018-12-17T10:01:02Z
gpaw1.4.0stampede2.tacc.xsede.orgGPAW is a density-functional theory (DFT) Python code2018-12-17T10:25:31Z
grace5.1.25bridges.psc.xsede.org2018-12-17T10:32:45Z
grace5.1.25comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
grace5.1.25comet.sdsc.xsede.org2018-12-17T10:01:02Z
graphlan0.9.7bridges.psc.xsede.orgGraPhlAn is a software tool for producing high-quality circular representations of taxonomic and phylogenetic trees. It focuses on concise, integrative, informative, and publication-ready representations of phylogenetically- and taxonomically-driven investigation.2018-12-17T10:32:45Z
gromacs2016.3comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
gromacs2016.3comet.sdsc.xsede.org2018-12-17T10:01:02Z
gromacs2016.3stampede2.tacc.xsede.orgmolecular dynamics simulation package2018-12-17T10:25:31Z
gromacs2016.4stampede2.tacc.xsede.orgmolecular dynamics simulation package2018-12-17T10:25:31Z
gromacs2018.1stampede2.tacc.xsede.orgmolecular dynamics simulation package2018-12-17T10:25:31Z
gromacs2018_cpubridges.psc.xsede.org2018-12-17T10:32:45Z
gromacs2018_gpubridges.psc.xsede.org2018-12-17T10:32:45Z
gromacs5.1.2bridges.psc.xsede.org2018-12-17T10:32:45Z
gromacs5.1.2stampede2.tacc.xsede.orgmolecular dynamics simulation package2018-12-17T10:25:31Z
gsissh7.1p2stampede2.tacc.xsede.orgGlobus GSI OpenSSH utility2018-12-17T10:25:31Z
gsissh7.1p2wrangler.tacc.xsede.orgGlobus GSI OpenSSH utility2018-12-17T10:19:24Z
gsl1.16comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
gsl1.16comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
gsl1.16comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
gsl1.16comet.sdsc.xsede.org2018-12-17T10:01:02Z
gsl1.16comet.sdsc.xsede.org2018-12-17T10:01:02Z
gsl1.16comet.sdsc.xsede.org2018-12-17T10:01:02Z
gsl1.16wrangler.tacc.xsede.orgprovides wide range of mathematical routines such as random number generators, special functions and least-squares fitting.2018-12-17T10:19:24Z
gsl2.1comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
gsl2.1comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
gsl2.1comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
gsl2.1comet.sdsc.xsede.org2018-12-17T10:01:02Z
gsl2.1comet.sdsc.xsede.org2018-12-17T10:01:02Z
gsl2.1comet.sdsc.xsede.org2018-12-17T10:01:02Z
gsl2.3stampede2.tacc.xsede.org2018-12-17T10:25:31Z
gsl2.5_gnubridges.psc.xsede.org2018-12-17T10:32:45Z
guile2.0.11comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
guile2.0.11comet.sdsc.xsede.org2018-12-17T10:01:02Z
gulp5.0stampede2.tacc.xsede.orgGulp - A lattice dynamics program2018-12-17T10:25:31Z
gurobi7.5.1bridges.psc.xsede.org2018-12-17T10:32:45Z
gurobi7.5.2bridges.psc.xsede.org2018-12-17T10:32:45Z
gx-map0.5.3.3-r1supermic.cct-lsu.xsede.orgTeraGrid GX Map utility2018-12-17T10:31:47Z
hadoop2.7.2bridges.psc.xsede.orgA Big Data processing framework.2018-12-17T10:32:45Z
hadoop-paths2.5.0wrangler.tacc.xsede.org2018-12-17T10:19:24Z
hdf42.11comet-gpu.sdsc.xsede.orghdf42018-12-17T10:01:02Z
hdf42.11comet-gpu.sdsc.xsede.orghdf42018-12-17T10:01:02Z
hdf42.11comet-gpu.sdsc.xsede.orghdf42018-12-17T10:01:02Z
hdf42.11comet.sdsc.xsede.orghdf42018-12-17T10:01:02Z
hdf42.11comet.sdsc.xsede.orghdf42018-12-17T10:01:02Z
hdf42.11comet.sdsc.xsede.orghdf42018-12-17T10:01:02Z
hdf51.10.1_gnubridges.psc.xsede.org2018-12-17T10:32:45Z
hdf51.8.14comet-gpu.sdsc.xsede.orghdf52018-12-17T10:01:02Z
hdf51.8.14comet-gpu.sdsc.xsede.orghdf52018-12-17T10:01:02Z
hdf51.8.14comet-gpu.sdsc.xsede.orghdf52018-12-17T10:01:02Z
hdf51.8.14comet.sdsc.xsede.orghdf52018-12-17T10:01:02Z
hdf51.8.14comet.sdsc.xsede.orghdf52018-12-17T10:01:02Z
hdf51.8.14comet.sdsc.xsede.orghdf52018-12-17T10:01:02Z
hdf51.8.14wrangler.tacc.xsede.orgGeneral purpose library and file format for storing scientific data (Serial Version).2018-12-17T10:19:24Z
hdf51.8.16stampede2.tacc.xsede.orgGeneral purpose library and file format for storing scientific data (Serial Version).2018-12-17T10:25:31Z
hdf51.8.16_gnubridges.psc.xsede.org2018-12-17T10:32:45Z
hdf51.8.16_intelbridges.psc.xsede.org2018-12-17T10:32:45Z
hisat22.0.4bridges.psc.xsede.org2018-12-17T10:32:45Z
hmmer2.3.2bridges.psc.xsede.org2018-12-17T10:32:45Z
hmmer3.1b2bridges.psc.xsede.org2018-12-17T10:32:45Z
hmmer3.1b2comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
hmmer3.1b2comet.sdsc.xsede.org2018-12-17T10:01:02Z
hmmer3.1b2stampede2.tacc.xsede.orgHMMER biosequence analysis using profile hidden Markov models2018-12-17T10:25:31Z
homer4.9_2-20-2017bridges.psc.xsede.orgA suite of tools for Motif Discovery and next-gen sequencing analysis2018-12-17T10:32:45Z
hoomd2018.9.5stampede2.tacc.xsede.orgGeneral-purpose particle simulation toolkit2018-12-17T10:25:31Z
hpctoolkit2017.10stampede2.tacc.xsede.orgProfiler2018-12-17T10:25:31Z
hpnssh7.5p1-hpn14v12bridges.psc.xsede.orgHPN-enabled OpenSSH clients2018-12-17T10:32:45Z
htop2.2.0stampede2.tacc.xsede.orgProcess Viewer using ncurses, info is similar to top2018-12-17T10:25:31Z
htseq0.6.1p1comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
htseq0.6.1p1comet.sdsc.xsede.org2018-12-17T10:01:02Z
htseq0.9.1bridges.psc.xsede.orgHTSeq is a Python package that provides infrastructure to process data from high-throughput sequencing assays.2018-12-17T10:32:45Z
htseq0.9.1stampede2.tacc.xsede.orgHTSeq is a Python package that provides infrastructure to process data from high-throughput sequencing assays2018-12-17T10:25:31Z
humann20.10.0bridges.psc.xsede.orgThe HMP Unified Metabolic Analysis Network 22018-12-17T10:32:45Z
hypre2.11stampede2.tacc.xsede.orgNumerical library for sparse solvers2018-12-17T10:25:31Z
hypre2.11-complexstampede2.tacc.xsede.orgNumerical library for sparse solvers2018-12-17T10:25:31Z
hypre2.11-complexdebugstampede2.tacc.xsede.orgNumerical library for sparse solvers2018-12-17T10:25:31Z
hypre2.11-cxxstampede2.tacc.xsede.orgNumerical library for sparse solvers2018-12-17T10:25:31Z
hypre2.11-cxxcomplexstampede2.tacc.xsede.orgNumerical library for sparse solvers2018-12-17T10:25:31Z
hypre2.11-cxxcomplexdebugstampede2.tacc.xsede.orgNumerical library for sparse solvers2018-12-17T10:25:31Z
hypre2.11-cxxdebugstampede2.tacc.xsede.orgNumerical library for sparse solvers2018-12-17T10:25:31Z
hypre2.11-debugstampede2.tacc.xsede.orgNumerical library for sparse solvers2018-12-17T10:25:31Z
icc16.0.2bridges.psc.xsede.org2018-12-17T10:32:45Z
icc16.0.3bridges.psc.xsede.org2018-12-17T10:32:45Z
idba-tran1.1.1bridges.psc.xsede.org2018-12-17T10:32:45Z
idba-tran1.1.1_longbridges.psc.xsede.org2018-12-17T10:32:45Z
idba-ud1.1.1bridges.psc.xsede.org2018-12-17T10:32:45Z
idba-ud1.1.1comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
idba-ud1.1.1comet.sdsc.xsede.org2018-12-17T10:01:02Z
idev1.3.0wrangler.tacc.xsede.orgInteractive Access to Compute Node(s) for Development via Batch System2018-12-17T10:19:24Z
idev1.5.4stampede2.tacc.xsede.orgInteractive Access to Compute Node(s) for Development via Batch System2018-12-17T10:25:31Z
idl8.4comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
idl8.4comet.sdsc.xsede.org2018-12-17T10:01:02Z
idl8.4stampede2.tacc.xsede.org2018-12-17T10:25:31Z
idl8.4wrangler.tacc.xsede.org2018-12-17T10:19:24Z
impi17.0.3stampede2.tacc.xsede.orgIntel MPI Library (C/C++/Fortran for x86_64)2018-12-17T10:25:31Z
impi18.0.0stampede2.tacc.xsede.orgIntel MPI Library (C/C++/Fortran for x86_64)2018-12-17T10:25:31Z
impi18.0.2stampede2.tacc.xsede.orgIntel MPI Library (C/C++/Fortran for x86_64)2018-12-17T10:25:31Z
impi5.0.3wrangler.tacc.xsede.orgIntel MPI Library (C/C++/Fortran for x86_64)2018-12-17T10:19:24Z
infernal1.1.2bridges.psc.xsede.orgInfernal - Sequence analysis using profiles of RNA sequence and secondary structure consensus2018-12-17T10:32:45Z
intel13.0.0supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
intel13.1.3supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
intel14.0.2supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
intel15.0.0supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
intel15.0.3wrangler.tacc.xsede.orgIntel Compiler Family (C/C++/Fortran for x86_64)2018-12-17T10:19:24Z
intel16.0.3stampede2.tacc.xsede.orgIntel Compiler Family (C/C++/Fortran for x86_64)2018-12-17T10:25:31Z
intel17.0.4stampede2.tacc.xsede.orgIntel Compiler Family (C/C++/Fortran for x86_64)2018-12-17T10:25:31Z
intel17.4bridges.psc.xsede.org2018-12-17T10:32:45Z
intel18.0.0stampede2.tacc.xsede.orgIntel Compiler Family (C/C++/Fortran for x86_64)2018-12-17T10:25:31Z
intel18.0.0.128bridges.psc.xsede.org2018-12-17T10:32:45Z
intel18.0.2stampede2.tacc.xsede.orgIntel Compiler Family (C/C++/Fortran for x86_64)2018-12-17T10:25:31Z
intel18.0.2wrangler.tacc.xsede.orgIntel Compiler Family (C/C++/Fortran for x86_64)2018-12-17T10:19:24Z
intel18.0.3.222bridges.psc.xsede.org2018-12-17T10:32:46Z
intel2013_sp1.2.144comet-gpu.sdsc.xsede.orgIntel Compiler Tools includes the following... Intel(R) Parallel Studio XE Composer Edition for Linux Intel(R) C++ Compiler XE for Linux Intel(R) Fortran Compiler XE for Linux Intel(R) Integrated Performance Primitives for Linux Intel(R) Math Kernel Library for Linux Intel(R) Threading Building Blocks for Linux2018-12-17T10:01:02Z
intel2013_sp1.2.144comet.sdsc.xsede.orgIntel Compiler Tools includes the following... Intel(R) Parallel Studio XE Composer Edition for Linux Intel(R) C++ Compiler XE for Linux Intel(R) Fortran Compiler XE for Linux Intel(R) Integrated Performance Primitives for Linux Intel(R) Math Kernel Library for Linux Intel(R) Threading Building Blocks for Linux2018-12-17T10:01:02Z
intel2015.2.164comet-gpu.sdsc.xsede.orgIntel Compiler Tools includes the following... Intel(R) Parallel Studio XE Composer Edition for Linux Intel(R) C++ Compiler XE for Linux Intel(R) Fortran Compiler XE for Linux Intel(R) Integrated Performance Primitives for Linux Intel(R) Math Kernel Library for Linux Intel(R) Threading Building Blocks for Linux2018-12-17T10:01:02Z
intel2015.2.164comet.sdsc.xsede.orgIntel Compiler Tools includes the following... Intel(R) Parallel Studio XE Composer Edition for Linux Intel(R) C++ Compiler XE for Linux Intel(R) Fortran Compiler XE for Linux Intel(R) Integrated Performance Primitives for Linux Intel(R) Math Kernel Library for Linux Intel(R) Threading Building Blocks for Linux2018-12-17T10:01:02Z
intel2016.3supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
intel2017.4supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
intel2018.0supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
intel2018.1supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
intel2019.1supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
intelcompilersbridges.psc.xsede.org2018-12-17T10:32:46Z
intelcompilers-2017bridges.psc.xsede.org2018-12-17T10:32:46Z
intelmpi-sh5.1.3.181bridges.psc.xsede.org2018-12-17T10:32:46Z
intelpython2.7.12bridges.psc.xsede.org2018-12-17T10:32:46Z
intelpython3.5.2bridges.psc.xsede.org2018-12-17T10:32:46Z
ipm2.0.3comet-gpu.sdsc.xsede.orgipm2018-12-17T10:01:02Z
ipm2.0.3comet.sdsc.xsede.orgipm2018-12-17T10:01:02Z
irods4wrangler.tacc.xsede.orgirods2018-12-17T10:19:24Z
irods4.2.1stampede2.tacc.xsede.org2018-12-17T10:25:31Z
irods4.2.2stampede2.tacc.xsede.orgiCommands - command line interface to iRODS2018-12-17T10:25:31Z
itac17.0.3stampede2.tacc.xsede.orgIntel Trace Analyzer and Collector2018-12-17T10:25:31Z
itac18.0.2stampede2.tacc.xsede.orgIntel Trace Analyzer and Collector2018-12-17T10:25:31Z
jags4.3.0bridges.psc.xsede.org2018-12-17T10:32:46Z
jasper1.900.1comet-gpu.sdsc.xsede.orgncar2018-12-17T10:01:02Z
jasper1.900.1comet.sdsc.xsede.orgncar2018-12-17T10:01:02Z
java1.7.0supermic.cct-lsu.xsede.orgJava2018-12-17T10:31:47Z
javajdk8u73bridges.psc.xsede.org2018-12-17T10:32:46Z
java-paths1.7.0wrangler.tacc.xsede.org2018-12-17T10:19:24Z
java641.8.0wrangler.tacc.xsede.orgJava2018-12-17T10:19:24Z
java641.8.0wrangler.tacc.xsede.org2018-12-17T10:19:24Z
java7jdk7u80bridges.psc.xsede.org2018-12-17T10:32:46Z
jdk321.7.0wrangler.tacc.xsede.orgJava2018-12-17T10:19:24Z
jdk321.8.0wrangler.tacc.xsede.orgJava2018-12-17T10:19:24Z
jdk641.8.0wrangler.tacc.xsede.orgJava2018-12-17T10:19:24Z
jellyfish1.1.11bridges.psc.xsede.orgSoftware to count k-mers in DNA sequences2018-12-17T10:32:46Z
jellyfish2.2.6wrangler.tacc.xsede.orgA fast, lock-free approach for efficient parallel counting of occurrences of k-mers.2018-12-17T10:19:24Z
jellyfish22.2.6bridges.psc.xsede.orgSoftware to count k-mers in DNA sequences2018-12-17T10:32:46Z
jpeg9bbridges.psc.xsede.org2018-12-17T10:32:46Z
julia0.5.2bridges.psc.xsede.org2018-12-17T10:32:46Z
julia0.6.0bridges.psc.xsede.org2018-12-17T10:32:46Z
julia0.6.0comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
julia0.6.0comet.sdsc.xsede.org2018-12-17T10:01:02Z
julia0.7.0bridges.psc.xsede.org2018-12-17T10:32:46Z
julia1.0.0bridges.psc.xsede.org2018-12-17T10:32:46Z
kallisto0.43.0bridges.psc.xsede.orgKallisto is a program for quantifying abundances of transcripts from RNA-Seq data.2018-12-17T10:32:46Z
kallisto0.43.1stampede2.tacc.xsede.orgKallisto is a program for quantifying abundances of transcripts from RNA-Seq data2018-12-17T10:25:31Z
kentUtils302.1.0stampede2.tacc.xsede.orgJim Kent command line bioinformatic utilities2018-12-17T10:25:31Z
keras1.1.2bridges.psc.xsede.org2018-12-17T10:32:46Z
keras2.0.4bridges.psc.xsede.org2018-12-17T10:32:46Z
keras2.0.6_anacondabridges.psc.xsede.org2018-12-17T10:32:46Z
keras2.0.6_anaconda_nogpubridges.psc.xsede.org2018-12-17T10:32:46Z
keras2.2.0_tf1.7_py2_gpubridges.psc.xsede.org2018-12-17T10:32:46Z
keras2.2.0_tf1.7_py3_gpubridges.psc.xsede.org2018-12-17T10:32:46Z
khmer2.0bridges.psc.xsede.orgA set of command-line tools for working with DNA shotgun sequencing data2018-12-17T10:32:46Z
kraken0.10.5-betabridges.psc.xsede.orgA taxonomic sequence classifier that assigns taxonomic labels to short DNA reads2018-12-17T10:32:46Z
kraken1.0bridges.psc.xsede.orgA taxonomic sequence classifier that assigns taxonomic labels to short DNA reads2018-12-17T10:32:46Z
kraken2.0.7-betabridges.psc.xsede.orgA taxonomic sequence classifier that assigns taxonomic labels to short DNA reads2018-12-17T10:32:46Z
lammps16Mar18stampede2.tacc.xsede.orgMolecular Dynamics Chemistry Package2018-12-17T10:25:31Z
lammps17Nov16stampede2.tacc.xsede.orgMolecular Dynamics Chemistry Package2018-12-17T10:25:31Z
lammps20170331comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
lammps20170331comet.sdsc.xsede.org2018-12-17T10:01:02Z
lammps31Mar17stampede2.tacc.xsede.orgMolecular Dynamics Chemistry Package2018-12-17T10:25:31Z
lapack3.6.0comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
lapack3.6.0comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
lapack3.6.0comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
lapack3.6.0comet.sdsc.xsede.org2018-12-17T10:01:02Z
lapack3.6.0comet.sdsc.xsede.org2018-12-17T10:01:02Z
lapack3.6.0comet.sdsc.xsede.org2018-12-17T10:01:02Z
lasagne0.1bridges.psc.xsede.org2018-12-17T10:32:46Z
launcher2.0wrangler.tacc.xsede.orgUtility for starting parametric job sweeps2018-12-17T10:19:24Z
launcher3.1stampede2.tacc.xsede.orgUtility for starting parametric job sweeps2018-12-17T10:25:31Z
launcher3.1wrangler.tacc.xsede.orgUtility for starting parametric job sweeps2018-12-17T10:19:24Z
launcher3.2stampede2.tacc.xsede.orgUtility for starting parametric job sweeps2018-12-17T10:25:31Z
leveldb1.18bridges.psc.xsede.org2018-12-17T10:32:46Z
leveldb1.20bridges.psc.xsede.org2018-12-17T10:32:46Z
libfabric1.4.2stampede2.tacc.xsede.orgFabric communication services2018-12-17T10:25:31Z
libfabric1.6.1stampede2.tacc.xsede.orgFabric communication services2018-12-17T10:25:31Z
llvm3.6.2comet-gpu.sdsc.xsede.orgllvm2018-12-17T10:01:02Z
llvm3.6.2comet.sdsc.xsede.orgllvm2018-12-17T10:01:02Z
lmod7.7wrangler.tacc.xsede.orgAn environment module system2018-12-17T10:19:24Z
lmod7.8.3stampede2.tacc.xsede.orgAn environment module system2018-12-17T10:25:31Z
ltools1.2stampede2.tacc.xsede.org2018-12-17T10:25:31Z
lz41.7.5wrangler.tacc.xsede.orgLZ4 is a fast compression algorithm2018-12-17T10:19:24Z
macs1.4.3bridges.psc.xsede.orgModel Based Analysis for ChIP-Seq data (MACS) for identifying transcription factor binding sites.2018-12-17T10:32:46Z
macs22.1.1bridges.psc.xsede.orgModel Based Analysis for ChIP-Seq data (MACS) for identifying transcription factor binding sites.2018-12-17T10:32:46Z
macs22.1.1stampede2.tacc.xsede.orgMACS2 empirically models the length of the sequenced ChIP fragments and uses it to improve the spatial resolution of predicted binding sites2018-12-17T10:25:31Z
macse1.2bridges.psc.xsede.org2018-12-17T10:32:46Z
mafft7.187comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
mafft7.187comet.sdsc.xsede.org2018-12-17T10:01:02Z
mafft7.300bridges.psc.xsede.org2018-12-17T10:32:46Z
make4.2.1bridges.psc.xsede.org2018-12-17T10:32:46Z
maker2.31.10bridges.psc.xsede.org2018-12-17T10:32:46Z
maker2.31.10-mpibridges.psc.xsede.org2018-12-17T10:32:46Z
mallet2.0.8RC3bridges.psc.xsede.org2018-12-17T10:32:46Z
malt0.3.8bridges.psc.xsede.orgMEGAN alignment tool, is a blast-like sequence alignment and analysis tool designed for processing high-throughput sequencing data, especially in the context of metagenomics.2018-12-17T10:32:46Z
mapsembler22.2.4bridges.psc.xsede.orgTargeted sequence assembler2018-12-17T10:32:46Z
marvel2018-20-01bridges.psc.xsede.orgMARVEL is a set of tools that facilitate the ovelapping, patching, correction, and assembly of long reads.2018-12-17T10:32:46Z
masurca3.1.3bridges.psc.xsede.org2018-12-17T10:32:46Z
masurca3.2.2bridges.psc.xsede.org2018-12-17T10:32:46Z
masurca3.2.6bridges.psc.xsede.org2018-12-17T10:32:46Z
masurca3.2.7bridges.psc.xsede.org2018-12-17T10:32:46Z
mathematica10.1supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
mathematica10.2wrangler.tacc.xsede.orgMathematica by Wolfram2018-12-17T10:19:24Z
mathematica10.4wrangler.tacc.xsede.orgMathematica by Wolfram2018-12-17T10:19:24Z
mathematica11.0bridges.psc.xsede.orgWolfram's Mathematica,Symbolic Algebra2018-12-17T10:32:46Z
mathematica11.2stampede2.tacc.xsede.orgcommercial technical computing system2018-12-17T10:25:31Z
mathematica11.2wrangler.tacc.xsede.orgcommercial technical computing system2018-12-17T10:19:24Z
mathematica9.0supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
matlab2015awrangler.tacc.xsede.orgMatlab 2015a from MathWorks2018-12-17T10:19:24Z
matlab2017astampede2.tacc.xsede.orgMatlab 2017a from MathWorks2018-12-17T10:25:31Z
matlab2017awrangler.tacc.xsede.orgMatlab 2017a from MathWorks2018-12-17T10:19:24Z
matlab2017bstampede2.tacc.xsede.orgMatlab 2017b from MathWorks2018-12-17T10:25:31Z
matlab2018acomet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
matlab2018acomet.sdsc.xsede.org2018-12-17T10:01:02Z
matlab2018astampede2.tacc.xsede.orgMatlab 2018a from MathWorks2018-12-17T10:25:31Z
matlabR2018abridges.psc.xsede.org2018-12-17T10:32:46Z
matlabr2013asupermic.cct-lsu.xsede.org2018-12-17T10:31:47Z
matlabr2015bsupermic.cct-lsu.xsede.org2018-12-17T10:31:47Z
matlabr2017asupermic.cct-lsu.xsede.org2018-12-17T10:31:47Z
matt1.00comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
matt1.00comet.sdsc.xsede.org2018-12-17T10:01:02Z
mauve2.3.1supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
maven3.3.9bridges.psc.xsede.org2018-12-17T10:32:46Z
maxbin2.1.1bridges.psc.xsede.org2018-12-17T10:32:46Z
mcr9.0.1_2016abridges.psc.xsede.org2018-12-17T10:32:46Z
mcr9.2stampede2.tacc.xsede.orgMatlab v9.2 Compiler Runtime from MathWorks2018-12-17T10:25:31Z
mcr9.3stampede2.tacc.xsede.orgMatlab v9.3 Compiler Runtime from MathWorks2018-12-17T10:25:31Z
mcr9.4stampede2.tacc.xsede.orgMatlab v9.4 Compiler Runtime from MathWorks2018-12-17T10:25:31Z
mcrv85wrangler.tacc.xsede.orgMatlab v85 Compiler Runtime from MathWorks2018-12-17T10:19:24Z
mct2.9.0bridges.psc.xsede.org2018-12-17T10:32:46Z
meep1.3stampede2.tacc.xsede.orgMeep is a free finite-difference time-domain simulation software package2018-12-17T10:25:31Z
megahit1.1.1bridges.psc.xsede.orgA single node assembler for large and complex metagenomics NGS reads, such as soil2018-12-17T10:32:46Z
megan5.11.3bridges.psc.xsede.org2018-12-17T10:32:46Z
meraculous2.2.4bridges.psc.xsede.orgA whole genome assembler for NGS data geared for large genomes.2018-12-17T10:32:46Z
metaphlan1.7.7bridges.psc.xsede.orgMETAgenomic PHyLogenetic ANalysis for taxonomic classification of metagenomic data2018-12-17T10:32:46Z
metaphlan22.6.0bridges.psc.xsede.orgMETAgenomic PHyLogenetic ANalysis for taxonomic classification of metagenomic data2018-12-17T10:32:46Z
metavelvet1.2.10-velvet-maxk245bridges.psc.xsede.orgMetaVelvet; An extension of the Velvet assembler for the de novo metagenome assembly of short sequence reads.2018-12-17T10:32:46Z
metavelvet1.2.10-velvet-maxk95bridges.psc.xsede.orgMetaVelvet; An extension of the Velvet assembler for the de novo metagenome assembly of short sequence reads.2018-12-17T10:32:46Z
methylpy1.2.5bridges.psc.xsede.orgWhole genome bisulfite sequencing (WGBS-seq) and Nucleosome Occupancy and Methylome sequencing (NOMe-seq) data processing and analysis2018-12-17T10:32:46Z
metis5.0.2stampede2.tacc.xsede.orgSerial graph partitioning and fill-reduction matrix ordering routines2018-12-17T10:25:31Z
metis5.1.0_gnubridges.psc.xsede.org2018-12-17T10:32:46Z
miRDeep20.0.7comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
miRDeep20.0.7comet.sdsc.xsede.org2018-12-17T10:01:02Z
migrate3.6.11comet-gpu.sdsc.xsede.orgmigrate2018-12-17T10:01:02Z
migrate3.6.11comet.sdsc.xsede.orgmigrate2018-12-17T10:01:02Z
migrate3.6.8comet-gpu.sdsc.xsede.orgmigrate2018-12-17T10:01:02Z
migrate3.6.8comet.sdsc.xsede.orgmigrate2018-12-17T10:01:02Z
minced0.2.0bridges.psc.xsede.orgMinCED is a program to find Clustered Regularly Interspaced Short Palindromic Repeats (CRISPRs) in full genomes or environmental datasets such as metagenomes2018-12-17T10:32:46Z
mira4.0.2bridges.psc.xsede.orgMIRA - Sequence assembler and sequence mapping for whole genome shotgun and EST / RNASeq sequencing data. Can use Sanger, 454, Illumina and IonTorrent data. PacBio: CCS and error corrected data usable.2018-12-17T10:32:46Z
miso0.5.3comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
miso0.5.3comet.sdsc.xsede.org2018-12-17T10:01:02Z
mkl11.1.2.144comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
mkl11.1.2.144comet.sdsc.xsede.org2018-12-17T10:01:02Z
mkl11.2.2.164comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
mkl11.2.2.164comet.sdsc.xsede.org2018-12-17T10:01:02Z
mkmod2.0stampede2.tacc.xsede.orgModulefile Maker2018-12-17T10:25:31Z
molden5.0.7comet-gpu.sdsc.xsede.orgmolden2018-12-17T10:01:02Z
molden5.0.7comet.sdsc.xsede.orgmolden2018-12-17T10:01:02Z
mono3.12.0comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
mono3.12.0comet.sdsc.xsede.org2018-12-17T10:01:02Z
moosegit.20170622stampede2.tacc.xsede.orgPortable Extendible Toolkit for Scientific Computing, Numerical library for sparse linear algebra2018-12-17T10:25:31Z
mothur1.38.1bridges.psc.xsede.orgSoftware for describing and comparing microbial communities2018-12-17T10:32:46Z
mpc1.0.3comet-gpu.sdsc.xsede.orgMPC library2018-12-17T10:01:02Z
mpc1.0.3comet.sdsc.xsede.orgMPC library2018-12-17T10:01:02Z
mpfr3.1.2comet-gpu.sdsc.xsede.orgMPFR library2018-12-17T10:01:02Z
mpfr3.1.2comet.sdsc.xsede.orgMPFR library2018-12-17T10:01:02Z
mpigcc_mvapichbridges.psc.xsede.org2018-12-17T10:32:46Z
mpigcc_openmpibridges.psc.xsede.org2018-12-17T10:32:46Z
mpigcc_openmpi-cudabridges.psc.xsede.org2018-12-17T10:32:46Z
mpiintel_mpibridges.psc.xsede.org2018-12-17T10:32:46Z
mpiintel_mvapichbridges.psc.xsede.org2018-12-17T10:32:46Z
mpiintel_openmpibridges.psc.xsede.org2018-12-17T10:32:46Z
mpipgi_openmpibridges.psc.xsede.org2018-12-17T10:32:46Z
mpipgi_openmpi.18.1bridges.psc.xsede.org2018-12-17T10:32:46Z
mpi-caffegit_bf17d5a4bridges.psc.xsede.org2018-12-17T10:32:46Z
mpi4py1.3.1comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
mpi4py1.3.1comet.sdsc.xsede.org2018-12-17T10:01:02Z
mpiblast1.6.0comet-gpu.sdsc.xsede.orgmpiblast2018-12-17T10:01:02Z
mpiblast1.6.0comet.sdsc.xsede.orgmpiblast2018-12-17T10:01:02Z
mrbayes3.2.3comet-gpu.sdsc.xsede.orgmrbayes2018-12-17T10:01:02Z
mrbayes3.2.3comet.sdsc.xsede.orgmrbayes2018-12-17T10:01:02Z
mrbayes3.2.4comet-gpu.sdsc.xsede.orgmrbayes2018-12-17T10:01:02Z
mrbayes3.2.4comet.sdsc.xsede.orgmrbayes2018-12-17T10:01:02Z
mrjob0.5.9bridges.psc.xsede.orgA python mapreduce framework.2018-12-17T10:32:46Z
mrjobdefaultbridges.psc.xsede.orgA python mapreduce framework.2018-12-17T10:32:46Z
mummer3.23bridges.psc.xsede.org2018-12-17T10:32:46Z
mummer3.23stampede2.tacc.xsede.orgMUMmer - A modular system for the rapid whole genome alignment of finished or draft sequence2018-12-17T10:25:31Z
mumps4.10stampede2.tacc.xsede.orgNumerical library for sparse solvers2018-12-17T10:25:31Z
mumps4.10-complexstampede2.tacc.xsede.orgNumerical library for sparse solvers2018-12-17T10:25:31Z
mumps4.10-complexdebugstampede2.tacc.xsede.orgNumerical library for sparse solvers2018-12-17T10:25:31Z
mumps4.10-cxxstampede2.tacc.xsede.orgNumerical library for sparse solvers2018-12-17T10:25:31Z
mumps4.10-cxxcomplexstampede2.tacc.xsede.orgNumerical library for sparse solvers2018-12-17T10:25:31Z
mumps4.10-cxxcomplexdebugstampede2.tacc.xsede.orgNumerical library for sparse solvers2018-12-17T10:25:31Z
mumps4.10-cxxdebugstampede2.tacc.xsede.orgNumerical library for sparse solvers2018-12-17T10:25:31Z
mumps4.10-debugstampede2.tacc.xsede.orgNumerical library for sparse solvers2018-12-17T10:25:31Z
mumps5.0.1-p1_gnu_openmpibridges.psc.xsede.org2018-12-17T10:32:46Z
muscle3.8.31supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
mvapich22.1wrangler.tacc.xsede.orgMPI-2 implementation for Infiniband2018-12-17T10:19:24Z
mvapich22.3stampede2.tacc.xsede.orgMPI-3.1 implementation2018-12-17T10:25:31Z
mvapich2_gdr2.1comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
mvapich2_gdr2.1comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
mvapich2_gdr2.1comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
mvapich2_gdr2.1comet.sdsc.xsede.org2018-12-17T10:01:02Z
mvapich2_gdr2.1comet.sdsc.xsede.org2018-12-17T10:01:02Z
mvapich2_gdr2.1comet.sdsc.xsede.org2018-12-17T10:01:02Z
mvapich2_gdr2.2comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
mvapich2_gdr2.2comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
mvapich2_gdr2.2comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
mvapich2_gdr2.2comet.sdsc.xsede.org2018-12-17T10:01:02Z
mvapich2_gdr2.2comet.sdsc.xsede.org2018-12-17T10:01:02Z
mvapich2_gdr2.2comet.sdsc.xsede.org2018-12-17T10:01:02Z
mvapich2_ib2.1comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
mvapich2_ib2.1comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
mvapich2_ib2.1comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
mvapich2_ib2.1comet.sdsc.xsede.org2018-12-17T10:01:02Z
mvapich2_ib2.1comet.sdsc.xsede.org2018-12-17T10:01:02Z
mvapich2_ib2.1comet.sdsc.xsede.org2018-12-17T10:01:02Z
mxml2.9comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
mxml2.9comet.sdsc.xsede.org2018-12-17T10:01:02Z
mycc2015-12-03bridges.psc.xsede.orgAutomated binning tool for metagenome sequence classification2018-12-17T10:32:46Z
namd2.10comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
namd2.10comet.sdsc.xsede.org2018-12-17T10:01:02Z
namd2.11_cpubridges.psc.xsede.org2018-12-17T10:32:46Z
namd2.12comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
namd2.12comet.sdsc.xsede.org2018-12-17T10:01:02Z
namd2.12stampede2.tacc.xsede.org2018-12-17T10:25:31Z
namd2.12_cpubridges.psc.xsede.org2018-12-17T10:32:46Z
namd2.9comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
namd2.9comet.sdsc.xsede.org2018-12-17T10:01:02Z
namd2017_12_05stampede2.tacc.xsede.org2018-12-17T10:25:31Z
namdnamd_gpubridges.psc.xsede.org2018-12-17T10:32:46Z
namd_cpu2.11_cpubridges.psc.xsede.org2018-12-17T10:32:46Z
namd_cpu2.12_cpubridges.psc.xsede.org2018-12-17T10:32:46Z
ncl_ncarg6.2.1comet-gpu.sdsc.xsede.orgncar_ncarg2018-12-17T10:01:02Z
ncl_ncarg6.2.1comet.sdsc.xsede.orgncar_ncarg2018-12-17T10:01:02Z
ncl_ncarg6.3.0stampede2.tacc.xsede.orgA library of graphics utilites from the Natl. Center for Atmospheric Research.2018-12-17T10:25:31Z
ncl_ncarg6.4.0bridges.psc.xsede.org2018-12-17T10:32:46Z
nco4.6.3stampede2.tacc.xsede.orgPrograms for manipulating and analyzing NetCDF files2018-12-17T10:25:31Z
ncview2.1.7comet-gpu.sdsc.xsede.orgncview2018-12-17T10:01:02Z
ncview2.1.7comet.sdsc.xsede.orgncview2018-12-17T10:01:02Z
ncview2.1.7stampede2.tacc.xsede.orgVisualization program for NetCDF files2018-12-17T10:25:31Z
netcdf3.6.2comet-gpu.sdsc.xsede.orgnetcdf2018-12-17T10:01:02Z
netcdf3.6.2comet-gpu.sdsc.xsede.orgnetcdf2018-12-17T10:01:02Z
netcdf3.6.2comet-gpu.sdsc.xsede.orgnetcdf2018-12-17T10:01:02Z
netcdf3.6.2comet.sdsc.xsede.orgnetcdf2018-12-17T10:01:02Z
netcdf3.6.2comet.sdsc.xsede.orgnetcdf2018-12-17T10:01:02Z
netcdf3.6.2comet.sdsc.xsede.orgnetcdf2018-12-17T10:01:02Z
netcdf3.6.2-gccbridges.psc.xsede.org2018-12-17T10:32:46Z
netcdf3.6.2-iccbridges.psc.xsede.org2018-12-17T10:32:46Z
netcdf4.3.2comet-gpu.sdsc.xsede.orgnetcdf2018-12-17T10:01:02Z
netcdf4.3.2comet-gpu.sdsc.xsede.orgnetcdf2018-12-17T10:01:02Z
netcdf4.3.2comet-gpu.sdsc.xsede.orgnetcdf2018-12-17T10:01:02Z
netcdf4.3.2comet.sdsc.xsede.orgnetcdf2018-12-17T10:01:02Z
netcdf4.3.2comet.sdsc.xsede.orgnetcdf2018-12-17T10:01:02Z
netcdf4.3.2comet.sdsc.xsede.orgnetcdf2018-12-17T10:01:02Z
netcdf4.3.2wrangler.tacc.xsede.orgI/O library which stores and retrieves data in self-describing, machine-independent datasets (Serial Version).2018-12-17T10:19:24Z
netcdf4.3.3.1stampede2.tacc.xsede.orgI/O library which stores and retrieves data in self-describing, machine-independent datasets (Serial Version).2018-12-17T10:25:31Z
netcdf4.4.1.1-gccbridges.psc.xsede.org2018-12-17T10:32:46Z
netcdf4.4.1.1-iccbridges.psc.xsede.org2018-12-17T10:32:46Z
netcdf4.4.4-fortran-gccbridges.psc.xsede.org2018-12-17T10:32:46Z
netcdf4.4.4-fortran-iccbridges.psc.xsede.org2018-12-17T10:32:46Z
neuron7.4bridges.psc.xsede.org2018-12-17T10:32:46Z
ngscheckmate2016.10.12bridges.psc.xsede.orgMEGAN alignment tool, is a blast-like sequence alignment and analysis tool designed for processing high-throughput sequencing data, especially in the context of metagenomics.2018-12-17T10:32:46Z
node8.9.4comet-gpu.sdsc.xsede.orgnode2018-12-17T10:01:02Z
node8.9.4comet.sdsc.xsede.orgnode2018-12-17T10:01:02Z
nwchem6.6bridges.psc.xsede.org2018-12-17T10:32:46Z
nwchem6.6comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
nwchem6.6comet.sdsc.xsede.org2018-12-17T10:01:02Z
nwchem6.6stampede2.tacc.xsede.orgNWChem aims to provide its users with computational chemistry tools that are scalable both in their ability to treat large scientific computational chemistry problems efficiently, and in their use of available parallel computing resources from high-performance parallel supercomputers to conventional workstation clusters.2018-12-17T10:25:31Z
nwchem6.8stampede2.tacc.xsede.orgNWChem aims to provide its users with computational chemistry tools that are scalable both in their ability to treat large scientific computational chemistry problems efficiently, and in their use of available parallel computing resources from high-performance parallel supercomputers to conventional workstation clusters.2018-12-17T10:25:31Z
octave4.2.1comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
octave4.2.1comet.sdsc.xsede.org2018-12-17T10:01:02Z
openbabel2.3.2comet-gpu.sdsc.xsede.orgopenbabel2018-12-17T10:01:02Z
openbabel2.3.2comet.sdsc.xsede.orgopenbabel2018-12-17T10:01:02Z
openbabel2.4.1stampede2.tacc.xsede.orgOpen Babel is an open source chemistry toolbox2018-12-17T10:25:31Z
openblas0.2.19bridges.psc.xsede.org2018-12-17T10:32:46Z
opencv2.4.13.2bridges.psc.xsede.org2018-12-17T10:32:46Z
opencv2.4.6.1wrangler.tacc.xsede.organ imaging library2018-12-17T10:19:24Z
opencv3.2.0bridges.psc.xsede.org2018-12-17T10:32:46Z
opencvopencvbridges.psc.xsede.org2018-12-17T10:32:46Z
openfoam2.3.0bridges.psc.xsede.org2018-12-17T10:32:46Z
openfoam4.1stampede2.tacc.xsede.orgOpenFOAM 4.12018-12-17T10:25:31Z
openfoam6.0.0bridges.psc.xsede.org2018-12-17T10:32:46Z
openmpi_ib1.8.4comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
openmpi_ib1.8.4comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
openmpi_ib1.8.4comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
openmpi_ib1.8.4comet.sdsc.xsede.org2018-12-17T10:01:02Z
openmpi_ib1.8.4comet.sdsc.xsede.org2018-12-17T10:01:02Z
openmpi_ib1.8.4comet.sdsc.xsede.org2018-12-17T10:01:02Z
openslide3.4.1bridges.psc.xsede.orgA library that provides an interface to read whole-slide images.2018-12-17T10:32:46Z
ospray1.5.0stampede2.tacc.xsede.org2018-12-17T10:25:31Z
ospray1.6.1stampede2.tacc.xsede.org2018-12-17T10:25:31Z
p3dfft2.7.4comet-gpu.sdsc.xsede.orgp3dfft2018-12-17T10:01:02Z
p3dfft2.7.4comet-gpu.sdsc.xsede.orgp3dfft2018-12-17T10:01:02Z
p3dfft2.7.4comet-gpu.sdsc.xsede.orgp3dfft2018-12-17T10:01:02Z
p3dfft2.7.4comet.sdsc.xsede.orgp3dfft2018-12-17T10:01:02Z
p3dfft2.7.4comet.sdsc.xsede.orgp3dfft2018-12-17T10:01:02Z
p3dfft2.7.4comet.sdsc.xsede.orgp3dfft2018-12-17T10:01:02Z
p3dfft2.7.5stampede2.tacc.xsede.orgNumerical library, contains discrete Fourier transformation2018-12-17T10:25:31Z
p4est2.0stampede2.tacc.xsede.orgoctree support for dealii2018-12-17T10:25:31Z
pacman3.29wrangler.tacc.xsede.orgTeraGrid Pacman utility2018-12-17T10:19:24Z
pacman3.29-r3supermic.cct-lsu.xsede.orgTeraGrid Pacman utility2018-12-17T10:31:47Z
paml4.9abridges.psc.xsede.org2018-12-17T10:32:46Z
pandoc1.17.2bridges.psc.xsede.org2018-12-17T10:32:46Z
papi5.4.1comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
papi5.4.1comet.sdsc.xsede.org2018-12-17T10:01:02Z
papi5.4.3bridges.psc.xsede.org2018-12-17T10:32:46Z
papi5.5.1stampede2.tacc.xsede.orgInterface to monitor performance counter hardware for quantifying application behavior2018-12-17T10:25:31Z
papi5.6.0stampede2.tacc.xsede.orgInterface to monitor performance counter hardware for quantifying application behavior2018-12-17T10:25:31Z
parallel-netcdf4.3.2wrangler.tacc.xsede.orgI/O library which stores and retrieves data in self-describing, machine-independent datasets (Parallel Version).2018-12-17T10:19:24Z
parallel-netcdf4.3.3.1stampede2.tacc.xsede.orgI/O library which stores and retrieves data in self-describing, machine-independent datasets (Parallel Version).2018-12-17T10:25:31Z
parallel-netcdf4.4.1.1wrangler.tacc.xsede.orgI/O library which stores and retrieves data in self-describing, machine-independent datasets (Parallel Version).2018-12-17T10:19:24Z
parallel_studio_xe2017.4.056bridges.psc.xsede.org2018-12-17T10:32:46Z
paraview5.5.2stampede2.tacc.xsede.org2018-12-17T10:25:31Z
paraview-osmesa5.5.2stampede2.tacc.xsede.org2018-12-17T10:25:31Z
parmetis4.0.3comet-gpu.sdsc.xsede.orgparmetis2018-12-17T10:01:02Z
parmetis4.0.3comet-gpu.sdsc.xsede.orgparmetis2018-12-17T10:01:02Z
parmetis4.0.3comet-gpu.sdsc.xsede.orgparmetis2018-12-17T10:01:02Z
parmetis4.0.3comet.sdsc.xsede.orgparmetis2018-12-17T10:01:02Z
parmetis4.0.3comet.sdsc.xsede.orgparmetis2018-12-17T10:01:02Z
parmetis4.0.3comet.sdsc.xsede.orgparmetis2018-12-17T10:01:02Z
parmetis4.0.3_gnu_openmpibridges.psc.xsede.org2018-12-17T10:32:46Z
parmetis_petsc4.0stampede2.tacc.xsede.orgNumerical library for sparse solvers2018-12-17T10:25:31Z
parmetis_petsc4.0-complexstampede2.tacc.xsede.orgNumerical library for sparse solvers2018-12-17T10:25:31Z
parmetis_petsc4.0-complexdebugstampede2.tacc.xsede.orgNumerical library for sparse solvers2018-12-17T10:25:31Z
parmetis_petsc4.0-cxxstampede2.tacc.xsede.orgNumerical library for sparse solvers2018-12-17T10:25:31Z
parmetis_petsc4.0-cxxcomplexstampede2.tacc.xsede.orgNumerical library for sparse solvers2018-12-17T10:25:31Z
parmetis_petsc4.0-cxxcomplexdebugstampede2.tacc.xsede.orgNumerical library for sparse solvers2018-12-17T10:25:31Z
parmetis_petsc4.0-cxxdebugstampede2.tacc.xsede.orgNumerical library for sparse solvers2018-12-17T10:25:31Z
parmetis_petsc4.0-debugstampede2.tacc.xsede.orgNumerical library for sparse solvers2018-12-17T10:25:31Z
parseltongue2.1bridges.psc.xsede.org2018-12-17T10:32:46Z
pbjelly15.8.24bridges.psc.xsede.org2018-12-17T10:32:46Z
pdt3.20comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
pdt3.20comet.sdsc.xsede.org2018-12-17T10:01:02Z
pdtoolkit3.24stampede2.tacc.xsede.orgInstruments code for TAU profiling and tracing2018-12-17T10:25:31Z
perl5.18.4bridges.psc.xsede.org2018-12-17T10:32:46Z
perl5.18.4-threadsbridges.psc.xsede.org2018-12-17T10:32:46Z
perl5.22.0supermic.cct-lsu.xsede.org2018-12-17T10:31:47Z
perl5.24.0-threadsbridges.psc.xsede.org2018-12-17T10:32:46Z
petsc3.5wrangler.tacc.xsede.orgNumerical library for sparse linear algebra2018-12-17T10:19:24Z
petsc3.5-complexwrangler.tacc.xsede.orgNumerical library for sparse linear algebra2018-12-17T10:19:24Z
petsc3.5-complexdebugwrangler.tacc.xsede.orgNumerical library for sparse linear algebra2018-12-17T10:19:24Z
petsc3.5-cxxwrangler.tacc.xsede.orgNumerical library for sparse linear algebra2018-12-17T10:19:24Z
petsc3.5-cxxcomplexwrangler.tacc.xsede.orgNumerical library for sparse linear algebra2018-12-17T10:19:24Z
petsc3.5-cxxcomplexdebugwrangler.tacc.xsede.orgNumerical library for sparse linear algebra2018-12-17T10:19:24Z
petsc3.5-cxxdebugwrangler.tacc.xsede.orgNumerical library for sparse linear algebra2018-12-17T10:19:24Z
petsc3.5-debugwrangler.tacc.xsede.orgNumerical library for sparse linear algebra2018-12-17T10:19:24Z
petsc3.5-singlewrangler.tacc.xsede.orgNumerical library for sparse linear algebra2018-12-17T10:19:24Z
petsc3.5-uniwrangler.tacc.xsede.orgNumerical library for sparse linear algebra2018-12-17T10:19:24Z
petsc3.5-unidebugwrangler.tacc.xsede.orgNumerical library for sparse linear algebra2018-12-17T10:19:24Z
petsc3.6.1bridges.psc.xsede.org2018-12-17T10:32:46Z
petsc3.6.1-intelbridges.psc.xsede.org2018-12-17T10:32:46Z
petsc3.6.3comet-gpu.sdsc.xsede.orgpetsc2018-12-17T10:01:02Z
petsc3.6.3comet-gpu.sdsc.xsede.orgpetsc2018-12-17T10:01:02Z
petsc3.6.3comet-gpu.sdsc.xsede.orgpetsc2018-12-17T10:01:02Z
petsc3.6.3comet.sdsc.xsede.orgpetsc2018-12-17T10:01:02Z
petsc3.6.3comet.sdsc.xsede.orgpetsc2018-12-17T10:01:02Z
petsc3.6.3comet.sdsc.xsede.orgpetsc2018-12-17T10:01:02Z
petsc3.7stampede2.tacc.xsede.orgPortable Extendible Toolkit for Scientific Computing, Numerical library for sparse linear algebra2018-12-17T10:25:31Z
petsc3.7-complexstampede2.tacc.xsede.orgPortable Extendible Toolkit for Scientific Computing, Numerical library for sparse linear algebra2018-12-17T10:25:31Z
petsc3.7-complexdebugstampede2.tacc.xsede.orgPortable Extendible Toolkit for Scientific Computing, Numerical library for sparse linear algebra2018-12-17T10:25:31Z
petsc3.7-cxxstampede2.tacc.xsede.orgPortable Extendible Toolkit for Scientific Computing, Numerical library for sparse linear algebra2018-12-17T10:25:31Z
petsc3.7-cxxcomplexstampede2.tacc.xsede.orgPortable Extendible Toolkit for Scientific Computing, Numerical library for sparse linear algebra2018-12-17T10:25:31Z
petsc3.7-cxxcomplexdebugstampede2.tacc.xsede.orgPortable Extendible Toolkit for Scientific Computing, Numerical library for sparse linear algebra2018-12-17T10:25:31Z
petsc3.7-cxxdebugstampede2.tacc.xsede.orgPortable Extendible Toolkit for Scientific Computing, Numerical library for sparse linear algebra2018-12-17T10:25:31Z
petsc3.7-cxxi64stampede2.tacc.xsede.orgPortable Extendible Toolkit for Scientific Computing, Numerical library for sparse linear algebra2018-12-17T10:25:31Z
petsc3.7-cxxi64debugstampede2.tacc.xsede.orgPortable Extendible Toolkit for Scientific Computing, Numerical library for sparse linear algebra2018-12-17T10:25:31Z
petsc3.7-debugstampede2.tacc.xsede.orgPortable Extendible Toolkit for Scientific Computing, Numerical library for sparse linear algebra2018-12-17T10:25:31Z
petsc3.7-i64stampede2.tacc.xsede.orgPortable Extendible Toolkit for Scientific Computing, Numerical library for sparse linear algebra2018-12-17T10:25:31Z
petsc3.7-i64debugstampede2.tacc.xsede.orgPortable Extendible Toolkit for Scientific Computing, Numerical library for sparse linear algebra2018-12-17T10:25:31Z
petsc3.7-singlestampede2.tacc.xsede.orgPortable Extendible Toolkit for Scientific Computing, Numerical library for sparse linear algebra2018-12-17T10:25:31Z
petsc3.7-unistampede2.tacc.xsede.orgPortable Extendible Toolkit for Scientific Computing, Numerical library for sparse linear algebra2018-12-17T10:25:31Z
petsc3.7-unidebugstampede2.tacc.xsede.orgPortable Extendible Toolkit for Scientific Computing, Numerical library for sparse linear algebra2018-12-17T10:25:31Z
petsc3.7.4_gnu_openmpibridges.psc.xsede.org2018-12-17T10:32:46Z
petsc3.9stampede2.tacc.xsede.orgPortable Extendible Toolkit for Scientific Computing, Numerical library for sparse linear algebra2018-12-17T10:25:31Z
petsc3.9-complexstampede2.tacc.xsede.orgPortable Extendible Toolkit for Scientific Computing, Numerical library for sparse linear algebra2018-12-17T10:25:31Z
petsc3.9-complexdebugstampede2.tacc.xsede.orgPortable Extendible Toolkit for Scientific Computing, Numerical library for sparse linear algebra2018-12-17T10:25:31Z
petsc3.9-cxxstampede2.tacc.xsede.orgPortable Extendible Toolkit for Scientific Computing, Numerical library for sparse linear algebra2018-12-17T10:25:31Z
petsc3.9-cxxcomplexstampede2.tacc.xsede.orgPortable Extendible Toolkit for Scientific Computing, Numerical library for sparse linear algebra2018-12-17T10:25:31Z
petsc3.9-cxxcomplexdebugstampede2.tacc.xsede.orgPortable Extendible Toolkit for Scientific Computing, Numerical library for sparse linear algebra2018-12-17T10:25:31Z
petsc3.9-cxxdebugstampede2.tacc.xsede.orgPortable Extendible Toolkit for Scientific Computing, Numerical library for sparse linear algebra2018-12-17T10:25:31Z
petsc3.9-cxxi64stampede2.tacc.xsede.orgPortable Extendible Toolkit for Scientific Computing, Numerical library for sparse linear algebra2018-12-17T10:25:31Z
petsc3.9-cxxi64debugstampede2.tacc.xsede.orgPortable Extendible Toolkit for Scientific Computing, Numerical library for sparse linear algebra2018-12-17T10:25:31Z
petsc3.9-debugstampede2.tacc.xsede.orgPortable Extendible Toolkit for Scientific Computing, Numerical library for sparse linear algebra2018-12-17T10:25:31Z
petsc3.9-i64stampede2.tacc.xsede.orgPortable Extendible Toolkit for Scientific Computing, Numerical library for sparse linear algebra2018-12-17T10:25:31Z
petsc3.9-i64debugstampede2.tacc.xsede.orgPortable Extendible Toolkit for Scientific Computing, Numerical library for sparse linear algebra2018-12-17T10:25:31Z
petsc3.9-singlestampede2.tacc.xsede.orgPortable Extendible Toolkit for Scientific Computing, Numerical library for sparse linear algebra2018-12-17T10:25:31Z
petsc3.9-unistampede2.tacc.xsede.orgPortable Extendible Toolkit for Scientific Computing, Numerical library for sparse linear algebra2018-12-17T10:25:31Z
petsc3.9-unidebugstampede2.tacc.xsede.orgPortable Extendible Toolkit for Scientific Computing, Numerical library for sparse linear algebra2018-12-17T10:25:31Z
pgi14.10supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
pgi14.3supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
pgi15.10supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
pgi15.4supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
pgi16.10bridges.psc.xsede.org2018-12-17T10:32:46Z
pgi16.3bridges.psc.xsede.org2018-12-17T10:32:46Z
pgi16.5supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
pgi17.10supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
pgi17.5bridges.psc.xsede.org2018-12-17T10:32:46Z
pgi17.5comet-gpu.sdsc.xsede.orgPGI compilers (C/C++/Fortran)2018-12-17T10:01:02Z
pgi17.5comet.sdsc.xsede.orgPGI compilers (C/C++/Fortran)2018-12-17T10:01:02Z
pgi18.1bridges.psc.xsede.org2018-12-17T10:32:46Z
pgi18.1supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
pgi18.1-ubuntubridges.psc.xsede.org2018-12-17T10:32:46Z
pgi18.7supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
phdf51.10.1wrangler.tacc.xsede.orgGeneral purpose library and file format for storing scientific data (Parallel Version).2018-12-17T10:19:24Z
phdf51.10.1_intelbridges.psc.xsede.org2018-12-17T10:32:46Z
phdf51.10.2_gnu_openmpibridges.psc.xsede.org2018-12-17T10:32:46Z
phdf51.8.14wrangler.tacc.xsede.orgGeneral purpose library and file format for storing scientific data (Parallel Version).2018-12-17T10:19:24Z
phdf51.8.16stampede2.tacc.xsede.orgGeneral purpose library and file format for storing scientific data (Parallel Version).2018-12-17T10:25:31Z
phdf51.8.16_gnu_openmpibridges.psc.xsede.org2018-12-17T10:32:46Z
phdf51.8.16_intelbridges.psc.xsede.org2018-12-17T10:32:46Z
phylosift1.0.1bridges.psc.xsede.org2018-12-17T10:32:46Z
picard2.1.1bridges.psc.xsede.org2018-12-17T10:32:46Z
picard2.11.0stampede2.tacc.xsede.orgPicard comprises Java-based command-line utilities that manipulate SAM files, and a Java API (SAM-JDK) for creating new programs that read and write SAM files. Both SAM text format and SAM binary (BAM) format are supported.2018-12-17T10:25:31Z
picard2.17.0bridges.psc.xsede.org2018-12-17T10:32:46Z
picard2.3.0comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
picard2.3.0comet.sdsc.xsede.org2018-12-17T10:01:02Z
pigz2.3.4supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
pilon1.16bridges.psc.xsede.org2018-12-17T10:32:46Z
platanus1.2.4bridges.psc.xsede.orgPlatanus is a de novo sequence assembler for NGS data.2018-12-17T10:32:46Z
plink1.9comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
plink1.9comet.sdsc.xsede.org2018-12-17T10:01:02Z
plinkseq0.10bridges.psc.xsede.orgPLINK/SEQ is an open-source C/C++ library for working with human genetic variation data2018-12-17T10:32:46Z
plumed2.4abridges.psc.xsede.orgPLUMED is an open source library for free energy calculations in molecular systems which works together with some of the most popular molecular dynamics engines.2018-12-17T10:32:46Z
pnetcdf1.8.1stampede2.tacc.xsede.orgI/O library which stores and retrieves data in self-describing, machine-independent datasets(PnetCDF).2018-12-17T10:25:31Z
png1.6.21bridges.psc.xsede.org2018-12-17T10:32:46Z
polymake2.14comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
polymake2.14comet.sdsc.xsede.org2018-12-17T10:01:02Z
pplacer1.1alpha17bridges.psc.xsede.orgSuite of programs for analyzing phylogenetic trees2018-12-17T10:32:46Z
primer31.1.4bridges.psc.xsede.org2018-12-17T10:32:46Z
primer32.2.3bridges.psc.xsede.org2018-12-17T10:32:46Z
primer32.3.7bridges.psc.xsede.org2018-12-17T10:32:46Z
prodigal2.6.2bridges.psc.xsede.orgProdigal is a program for protein-coding gene prediction for prokaryotic genomes.2018-12-17T10:32:46Z
prodigal2.6.3bridges.psc.xsede.orgProdigal is a program for protein-coding gene prediction for prokaryotic genomes.2018-12-17T10:32:46Z
proj4.9.3comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
proj4.9.3comet.sdsc.xsede.org2018-12-17T10:01:02Z
prokka1.11bridges.psc.xsede.orgA software tool for the rapid annotation of prokaryotic genomes.2018-12-17T10:32:46Z
protobuf3.2.0bridges.psc.xsede.org2018-12-17T10:32:46Z
psi41.0.0bridges.psc.xsede.org2018-12-17T10:32:46Z
pylauncher2.1wrangler.tacc.xsede.orgflexible parametric job launcher2018-12-17T10:19:24Z
pylauncher3.0stampede2.tacc.xsede.org2018-12-17T10:25:31Z
pysam0.8.4comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
pysam0.8.4comet.sdsc.xsede.org2018-12-17T10:01:02Z
python2.7.10comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
python2.7.10comet.sdsc.xsede.org2018-12-17T10:01:02Z
python2.7.10-mkl-micsupermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
python2.7.11_gccbridges.psc.xsede.orgThis version of python provides python 2.7.11, including numpy, scipy, matplotlib, nose and cutadapt.2018-12-17T10:32:46Z
python2.7.11_gcc_np1.11bridges.psc.xsede.org2018-12-17T10:32:46Z
python2.7.13stampede2.tacc.xsede.org2018-12-17T10:25:31Z
python2.7.13stampede2.tacc.xsede.orgscientific scripting package2018-12-17T10:25:31Z
python2.7.13wrangler.tacc.xsede.orgscientific scripting package2018-12-17T10:19:24Z
python2.7.13wrangler.tacc.xsede.org2018-12-17T10:19:24Z
python2.7.13-anaconda-tensorflowsupermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
python2.7.14_gcc5_np1.13bridges.psc.xsede.org2018-12-17T10:32:46Z
python2.7.14_gcc_np1.13bridges.psc.xsede.org2018-12-17T10:32:46Z
python2.7.14_icc_np1.13bridges.psc.xsede.org2018-12-17T10:32:46Z
python2.7.7-anacondasupermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
python2.7.9wrangler.tacc.xsede.orgscientific scripting package2018-12-17T10:19:24Z
python2.7.9wrangler.tacc.xsede.orgscientific scripting package2018-12-17T10:19:24Z
python3.4.2bridges.psc.xsede.org2018-12-17T10:32:46Z
python3.6.2-anaconda-tensorflowsupermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
python3.6.4_gcc5_np1.14.5bridges.psc.xsede.org2018-12-17T10:32:46Z
pythonintel_2.7.12bridges.psc.xsede.org2018-12-17T10:32:46Z
pythonintel_2.7.13bridges.psc.xsede.org2018-12-17T10:32:46Z
pythonintel_2.7.14bridges.psc.xsede.org2018-12-17T10:32:46Z
python22.7.11_gccbridges.psc.xsede.org2018-12-17T10:32:46Z
python22.7.11_gcc_np1.11bridges.psc.xsede.org2018-12-17T10:32:46Z
python22.7.14stampede2.tacc.xsede.org2018-12-17T10:25:31Z
python22.7.14stampede2.tacc.xsede.orgscientific scripting package2018-12-17T10:25:31Z
python22.7.14_gcc5_np1.13bridges.psc.xsede.org2018-12-17T10:32:46Z
python2intel_2.7.12bridges.psc.xsede.org2018-12-17T10:32:46Z
python2intel_2.7.13bridges.psc.xsede.org2018-12-17T10:32:46Z
python33.4.2bridges.psc.xsede.org2018-12-17T10:32:46Z
python33.5.2_gcc_mklbridges.psc.xsede.org2018-12-17T10:32:46Z
python33.6.3stampede2.tacc.xsede.orgscientific scripting package2018-12-17T10:25:31Z
python33.6.3stampede2.tacc.xsede.org2018-12-17T10:25:31Z
python3intel_3.5.2bridges.psc.xsede.org2018-12-17T10:32:46Z
python3intel_3.6.2bridges.psc.xsede.org2018-12-17T10:32:46Z
python3intel_3.6.3bridges.psc.xsede.org2018-12-17T10:32:46Z
pytorch0.1.5bridges.psc.xsede.org2018-12-17T10:32:46Z
qchem5.1.1comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
qchem5.1.1comet.sdsc.xsede.org2018-12-17T10:01:02Z
qe6.2stampede2.tacc.xsede.orgIntegrated suite of computer codes for electronic structure calculations and material modeling at the nanoscale.2018-12-17T10:25:31Z
qe6.2.1stampede2.tacc.xsede.orgIntegrated suite of computer codes for electronic structure calculations and material modeling at the nanoscale.2018-12-17T10:25:31Z
qe6.3comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
qe6.3comet.sdsc.xsede.org2018-12-17T10:01:02Z
qorts44ab10dbridges.psc.xsede.orgThe QoRTs software package is a fast, efficient, and portable multifunction toolkit designed to assist in the analysis, quality control, and data management of RNA-Seq datasets.2018-12-17T10:32:46Z
qt44.8.7stampede2.tacc.xsede.org2018-12-17T10:25:31Z
qt55.9.4stampede2.tacc.xsede.org2018-12-17T10:25:31Z
randfold2.0comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
randfold2.0comet.sdsc.xsede.org2018-12-17T10:01:02Z
rapidminer7.1.0comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
rapidminer7.1.0comet.sdsc.xsede.org2018-12-17T10:01:02Z
raxml8.1.24comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
raxml8.1.24comet.sdsc.xsede.org2018-12-17T10:01:02Z
raxml8.2.3comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
raxml8.2.3comet.sdsc.xsede.org2018-12-17T10:01:02Z
raxml8.2.9bridges.psc.xsede.org2018-12-17T10:32:46Z
ray2.3.1bridges.psc.xsede.org2018-12-17T10:32:46Z
relion1.4comet-gpu.sdsc.xsede.orgrelion2018-12-17T10:01:02Z
relion1.4comet.sdsc.xsede.orgrelion2018-12-17T10:01:02Z
relion2.1bridges.psc.xsede.orgRELION (for REgularised LIkelihood OptimisatioN, pronounce rely-on) is a stand-alone computer program that employs an empirical Bayesian approach to refinement of (multiple) 3D reconstructions or 2D class averages in electron cryo-microscopy (cryo-EM).2018-12-17T10:32:46Z
remora1.8supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
remora1.8.1stampede2.tacc.xsede.orgREsource MOnitoring for Remote Applications2018-12-17T10:25:31Z
remora1.8.2stampede2.tacc.xsede.orgREsource MOnitoring for Remote Applications2018-12-17T10:25:31Z
repeatmasker4.0.6bridges.psc.xsede.orgRepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences2018-12-17T10:32:46Z
rnammer1.2bridges.psc.xsede.org2018-12-17T10:32:46Z
rnnotator3.4.0supermic.cct-lsu.xsede.org2018-12-17T10:31:47Z
rosetta3.7bridges.psc.xsede.org2018-12-17T10:32:46Z
rosetta3.8stampede2.tacc.xsede.orgThe premier software suite for macromolecular modeling2018-12-17T10:25:31Z
rsem1.2.21bridges.psc.xsede.org2018-12-17T10:32:46Z
rseqc2.6.4comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
rseqc2.6.4comet.sdsc.xsede.org2018-12-17T10:01:02Z
rstudio1.1bridges.psc.xsede.org2018-12-17T10:32:46Z
rum2.0.5supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
sailfish0.9.2bridges.psc.xsede.org2018-12-17T10:32:46Z
salmon0.6.0bridges.psc.xsede.org2018-12-17T10:32:46Z
salmon0.7.2bridges.psc.xsede.org2018-12-17T10:32:46Z
salmon0.8.1bridges.psc.xsede.org2018-12-17T10:32:46Z
salmon0.9.1bridges.psc.xsede.org2018-12-17T10:32:46Z
samtools0.1.19bridges.psc.xsede.org2018-12-17T10:32:46Z
samtools1.2comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
samtools1.2comet.sdsc.xsede.org2018-12-17T10:01:02Z
samtools1.3bridges.psc.xsede.org2018-12-17T10:32:46Z
samtools1.3comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
samtools1.3comet.sdsc.xsede.org2018-12-17T10:01:02Z
samtools1.3wrangler.tacc.xsede.orgSamtools is a suite of programs for interacting with high-throughput sequencing data.2018-12-17T10:19:24Z
samtools1.3.1bridges.psc.xsede.org2018-12-17T10:32:46Z
samtools1.5stampede2.tacc.xsede.orgTools (written in C using htslib) for manipulating next-generation sequencing data2018-12-17T10:25:31Z
samtools1.6wrangler.tacc.xsede.orgTools (written in C using htslib) for manipulating next-generation sequencing data2018-12-17T10:19:24Z
samtools1.7bridges.psc.xsede.org2018-12-17T10:32:46Z
sanitytool1.4stampede2.tacc.xsede.org2018-12-17T10:25:31Z
sanitytool1.5stampede2.tacc.xsede.org2018-12-17T10:25:31Z
scalapack2.0.2comet-gpu.sdsc.xsede.orgscalapack2018-12-17T10:01:02Z
scalapack2.0.2comet-gpu.sdsc.xsede.orgscalapack2018-12-17T10:01:02Z
scalapack2.0.2comet-gpu.sdsc.xsede.orgscalapack2018-12-17T10:01:02Z
scalapack2.0.2comet.sdsc.xsede.orgscalapack2018-12-17T10:01:02Z
scalapack2.0.2comet.sdsc.xsede.orgscalapack2018-12-17T10:01:02Z
scalapack2.0.2comet.sdsc.xsede.orgscalapack2018-12-17T10:01:02Z
scikitlearn_0.17.1_image_0.12.3bridges.psc.xsede.org2018-12-17T10:32:46Z
scikitpy2.7.14_gcc5_np1.13bridges.psc.xsede.org2018-12-17T10:32:46Z
scipy2.7comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
scipy2.7comet.sdsc.xsede.org2018-12-17T10:01:02Z
scotch6.0.0_intelbridges.psc.xsede.org2018-12-17T10:32:46Z
scotch6.0.4_gnu_openmpibridges.psc.xsede.org2018-12-17T10:32:46Z
scythe0.981bridges.psc.xsede.org2018-12-17T10:32:46Z
seqtk1.2-r94bridges.psc.xsede.org2018-12-17T10:32:46Z
settarg7.7wrangler.tacc.xsede.orgA dynamic environment system based on Lmod2018-12-17T10:19:24Z
settarg7.8.3stampede2.tacc.xsede.org2018-12-17T10:25:31Z
shannon2017-05-10bridges.psc.xsede.orgA program for assembling transcripts from RNA-Seq data using an information-theoretic approach.2018-12-17T10:32:46Z
sickle1.33bridges.psc.xsede.org2018-12-17T10:32:46Z
siesta4.0comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
siesta4.0comet.sdsc.xsede.org2018-12-17T10:01:02Z
siesta4.0stampede2.tacc.xsede.orgSpanish Initiative for Electronic Simulations with Thousands of Atoms2018-12-17T10:25:31Z
signalp4.1cbridges.psc.xsede.org2018-12-17T10:32:46Z
silo4.10.2stampede2.tacc.xsede.orga scalable mesh and field I/O library and scientific database2018-12-17T10:25:31Z
singularity2.5.1bridges.psc.xsede.orgSingularity HPC container software2018-12-17T10:32:46Z
singularity2.5.2comet-gpu.sdsc.xsede.orgsingularity2018-12-17T10:01:02Z
singularity2.5.2comet.sdsc.xsede.orgsingularity2018-12-17T10:01:02Z
singularity2.6.0bridges.psc.xsede.orgSingularity HPC container software2018-12-17T10:32:46Z
singularity3.0.0bridges.psc.xsede.orgSingularity HPC container software2018-12-17T10:32:46Z
slepc3.6.2comet-gpu.sdsc.xsede.orgslepc2018-12-17T10:01:02Z
slepc3.6.2comet-gpu.sdsc.xsede.orgslepc2018-12-17T10:01:02Z
slepc3.6.2comet-gpu.sdsc.xsede.orgslepc2018-12-17T10:01:02Z
slepc3.6.2comet.sdsc.xsede.orgslepc2018-12-17T10:01:02Z
slepc3.6.2comet.sdsc.xsede.orgslepc2018-12-17T10:01:02Z
slepc3.6.2comet.sdsc.xsede.orgslepc2018-12-17T10:01:02Z
slepc3.7stampede2.tacc.xsede.orgScalable Library for Eigen Problem Computations, Library of eigensolvers2018-12-17T10:25:31Z
slepc3.7-complexstampede2.tacc.xsede.orgScalable Library for Eigen Problem Computations, Library of eigensolvers2018-12-17T10:25:31Z
slepc3.7-complexdebugstampede2.tacc.xsede.orgScalable Library for Eigen Problem Computations, Library of eigensolvers2018-12-17T10:25:31Z
slepc3.7-cxxstampede2.tacc.xsede.orgScalable Library for Eigen Problem Computations, Library of eigensolvers2018-12-17T10:25:31Z
slepc3.7-cxxcomplexstampede2.tacc.xsede.orgScalable Library for Eigen Problem Computations, Library of eigensolvers2018-12-17T10:25:31Z
slepc3.7-cxxcomplexdebugstampede2.tacc.xsede.orgScalable Library for Eigen Problem Computations, Library of eigensolvers2018-12-17T10:25:31Z
slepc3.7-cxxdebugstampede2.tacc.xsede.orgScalable Library for Eigen Problem Computations, Library of eigensolvers2018-12-17T10:25:31Z
slepc3.7-cxxi64stampede2.tacc.xsede.orgScalable Library for Eigen Problem Computations, Library of eigensolvers2018-12-17T10:25:31Z
slepc3.7-cxxi64debugstampede2.tacc.xsede.orgScalable Library for Eigen Problem Computations, Library of eigensolvers2018-12-17T10:25:31Z
slepc3.7-debugstampede2.tacc.xsede.orgScalable Library for Eigen Problem Computations, Library of eigensolvers2018-12-17T10:25:31Z
slepc3.7-i64stampede2.tacc.xsede.orgScalable Library for Eigen Problem Computations, Library of eigensolvers2018-12-17T10:25:31Z
slepc3.7-i64debugstampede2.tacc.xsede.orgScalable Library for Eigen Problem Computations, Library of eigensolvers2018-12-17T10:25:31Z
slepc3.7-singlestampede2.tacc.xsede.orgScalable Library for Eigen Problem Computations, Library of eigensolvers2018-12-17T10:25:31Z
slepc3.7-unistampede2.tacc.xsede.orgScalable Library for Eigen Problem Computations, Library of eigensolvers2018-12-17T10:25:31Z
slepc3.7-unidebugstampede2.tacc.xsede.orgScalable Library for Eigen Problem Computations, Library of eigensolvers2018-12-17T10:25:31Z
slepc3.9stampede2.tacc.xsede.orgScalable Library for Eigen Problem Computations, Library of eigensolvers2018-12-17T10:25:31Z
slepc3.9-complexstampede2.tacc.xsede.orgScalable Library for Eigen Problem Computations, Library of eigensolvers2018-12-17T10:25:31Z
slepc3.9-complexdebugstampede2.tacc.xsede.orgScalable Library for Eigen Problem Computations, Library of eigensolvers2018-12-17T10:25:31Z
slepc3.9-cxxstampede2.tacc.xsede.orgScalable Library for Eigen Problem Computations, Library of eigensolvers2018-12-17T10:25:31Z
slepc3.9-cxxcomplexstampede2.tacc.xsede.orgScalable Library for Eigen Problem Computations, Library of eigensolvers2018-12-17T10:25:31Z
slepc3.9-cxxcomplexdebugstampede2.tacc.xsede.orgScalable Library for Eigen Problem Computations, Library of eigensolvers2018-12-17T10:25:31Z
slepc3.9-cxxdebugstampede2.tacc.xsede.orgScalable Library for Eigen Problem Computations, Library of eigensolvers2018-12-17T10:25:31Z
slepc3.9-cxxi64stampede2.tacc.xsede.orgScalable Library for Eigen Problem Computations, Library of eigensolvers2018-12-17T10:25:31Z
slepc3.9-cxxi64debugstampede2.tacc.xsede.orgScalable Library for Eigen Problem Computations, Library of eigensolvers2018-12-17T10:25:31Z
slepc3.9-debugstampede2.tacc.xsede.orgScalable Library for Eigen Problem Computations, Library of eigensolvers2018-12-17T10:25:31Z
slepc3.9-i64stampede2.tacc.xsede.orgScalable Library for Eigen Problem Computations, Library of eigensolvers2018-12-17T10:25:31Z
slepc3.9-i64debugstampede2.tacc.xsede.orgScalable Library for Eigen Problem Computations, Library of eigensolvers2018-12-17T10:25:31Z
slepc3.9-singlestampede2.tacc.xsede.orgScalable Library for Eigen Problem Computations, Library of eigensolvers2018-12-17T10:25:31Z
slepc3.9-unistampede2.tacc.xsede.orgScalable Library for Eigen Problem Computations, Library of eigensolvers2018-12-17T10:25:31Z
slepc3.9-unidebugstampede2.tacc.xsede.orgScalable Library for Eigen Problem Computations, Library of eigensolvers2018-12-17T10:25:31Z
snvmix0.11.8-r5bridges.psc.xsede.org2018-12-17T10:32:46Z
soapdenovo240comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
soapdenovo240comet.sdsc.xsede.org2018-12-17T10:01:02Z
soapdenovo22015-10-09bridges.psc.xsede.orgSOAPdenovo2 is a de novo assembler for next generation sequencing reads.2018-12-17T10:32:46Z
somaticsniper1.0.5bridges.psc.xsede.org2018-12-17T10:32:46Z
spades3.10.1bridges.psc.xsede.orgSt. Petersburg genome assembler - An assembly toolkit containing various assembly pipelines2018-12-17T10:32:46Z
spades3.10.1wrangler.tacc.xsede.orgSPAdes – St. Petersburg genome assembler2018-12-17T10:19:24Z
spades3.11.1bridges.psc.xsede.orgSt. Petersburg genome assembler - An assembly toolkit containing various assembly pipelines2018-12-17T10:32:46Z
spades3.8.1bridges.psc.xsede.orgSt. Petersburg genome assembler - An assembly toolkit containing various assembly pipelines2018-12-17T10:32:46Z
spades3.9.0comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
spades3.9.0comet.sdsc.xsede.org2018-12-17T10:01:02Z
spark2.1.0bridges.psc.xsede.orgA big data processing framework.2018-12-17T10:32:46Z
sprng2.0bridges.psc.xsede.org2018-12-17T10:32:46Z
sprng2.0bcomet-gpu.sdsc.xsede.orgsprng2018-12-17T10:01:02Z
sprng2.0bcomet-gpu.sdsc.xsede.orgsprng2018-12-17T10:01:02Z
sprng2.0bcomet-gpu.sdsc.xsede.orgsprng2018-12-17T10:01:02Z
sprng2.0bcomet.sdsc.xsede.orgsprng2018-12-17T10:01:02Z
sprng2.0bcomet.sdsc.xsede.orgsprng2018-12-17T10:01:02Z
sprng2.0bcomet.sdsc.xsede.orgsprng2018-12-17T10:01:02Z
squid1.9gcomet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
squid1.9gcomet.sdsc.xsede.org2018-12-17T10:01:02Z
sra-toolkit2.8.1-2bridges.psc.xsede.org2018-12-17T10:32:46Z
sra-toolkit2.9.1-1bridges.psc.xsede.org2018-12-17T10:32:46Z
sratoolkit2.8.1wrangler.tacc.xsede.orgThe SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives.2018-12-17T10:19:24Z
sratoolkit2.8.2stampede2.tacc.xsede.orgThe SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives2018-12-17T10:25:31Z
stacks1.37comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
stacks1.37comet.sdsc.xsede.org2018-12-17T10:01:02Z
star2.5.3astampede2.tacc.xsede.orgSpliced Transcripts Alignment to a Reference2018-12-17T10:25:31Z
star2.6.0cstampede2.tacc.xsede.orgSpliced Transcripts Alignment to a Reference2018-12-17T10:25:31Z
star-fusion1.1.0bridges.psc.xsede.orgSTAR-Fusion uses the STAR aligner to identify candidate fusion transcripts supported by Illumina reads and maps junction reads and spanning reads to a reference annotation set.2018-12-17T10:32:46Z
star-fusion1.3.1bridges.psc.xsede.orgSTAR-Fusion uses the STAR aligner to identify candidate fusion transcripts supported by Illumina reads and maps junction reads and spanning reads to a reference annotation set.2018-12-17T10:32:46Z
staraligner2.5.2bbridges.psc.xsede.orgSpliced Transcripts Alignment to a Reference2018-12-17T10:32:46Z
staraligner2.5.4bbridges.psc.xsede.orgSpliced Transcripts Alignment to a Reference2018-12-17T10:32:46Z
strelka1.0.14bridges.psc.xsede.org2018-12-17T10:32:46Z
stringtie1.3.3bridges.psc.xsede.orgTranscript assembly and quantification for RNA-Seq2018-12-17T10:32:46Z
subread1.6.1bridges.psc.xsede.org2018-12-17T10:32:46Z
sundials2.5.0stampede2.tacc.xsede.orgNumerical library for sparse solvers2018-12-17T10:25:31Z
sundials2.5.0-complexstampede2.tacc.xsede.orgNumerical library for sparse solvers2018-12-17T10:25:31Z
sundials2.5.0-complexdebugstampede2.tacc.xsede.orgNumerical library for sparse solvers2018-12-17T10:25:31Z
sundials2.5.0-cxxstampede2.tacc.xsede.orgNumerical library for sparse solvers2018-12-17T10:25:31Z
sundials2.5.0-cxxcomplexstampede2.tacc.xsede.orgNumerical library for sparse solvers2018-12-17T10:25:31Z
sundials2.5.0-cxxcomplexdebugstampede2.tacc.xsede.orgNumerical library for sparse solvers2018-12-17T10:25:31Z
sundials2.5.0-cxxdebugstampede2.tacc.xsede.orgNumerical library for sparse solvers2018-12-17T10:25:31Z
sundials2.5.0-debugstampede2.tacc.xsede.orgNumerical library for sparse solvers2018-12-17T10:25:31Z
sundials2.6.2comet-gpu.sdsc.xsede.orgsundials2018-12-17T10:01:02Z
sundials2.6.2comet-gpu.sdsc.xsede.orgsundials2018-12-17T10:01:02Z
sundials2.6.2comet-gpu.sdsc.xsede.orgsundials2018-12-17T10:01:02Z
sundials2.6.2comet.sdsc.xsede.orgsundials2018-12-17T10:01:02Z
sundials2.6.2comet.sdsc.xsede.orgsundials2018-12-17T10:01:02Z
sundials2.6.2comet.sdsc.xsede.orgsundials2018-12-17T10:01:02Z
sundials3.2.0bridges.psc.xsede.org2018-12-17T10:32:46Z
super-deduper7c48db4bridges.psc.xsede.orgA tool for removing PCR duplicates from sequencing data.2018-12-17T10:32:46Z
superlu4.2comet-gpu.sdsc.xsede.orgsuperlu2018-12-17T10:01:02Z
superlu4.2comet-gpu.sdsc.xsede.orgsuperlu2018-12-17T10:01:02Z
superlu4.2comet-gpu.sdsc.xsede.orgsuperlu2018-12-17T10:01:02Z
superlu4.2comet.sdsc.xsede.orgsuperlu2018-12-17T10:01:02Z
superlu4.2comet.sdsc.xsede.orgsuperlu2018-12-17T10:01:02Z
superlu4.2comet.sdsc.xsede.orgsuperlu2018-12-17T10:01:02Z
superlu5.2.1stampede2.tacc.xsede.orgNumerical library for sparse solvers2018-12-17T10:25:31Z
superlu5.2.1-complexstampede2.tacc.xsede.orgNumerical library for sparse solvers2018-12-17T10:25:31Z
superlu5.2.1-complexdebugstampede2.tacc.xsede.orgNumerical library for sparse solvers2018-12-17T10:25:31Z
superlu5.2.1-cxxstampede2.tacc.xsede.orgNumerical library for sparse solvers2018-12-17T10:25:31Z
superlu5.2.1-cxxcomplexstampede2.tacc.xsede.orgNumerical library for sparse solvers2018-12-17T10:25:31Z
superlu5.2.1-cxxcomplexdebugstampede2.tacc.xsede.orgNumerical library for sparse solvers2018-12-17T10:25:31Z
superlu5.2.1-cxxdebugstampede2.tacc.xsede.orgNumerical library for sparse solvers2018-12-17T10:25:31Z
superlu5.2.1-debugstampede2.tacc.xsede.orgNumerical library for sparse solvers2018-12-17T10:25:31Z
superlu_dist5.1.2_gnu_openmpibridges.psc.xsede.org2018-12-17T10:32:46Z
superlu_seq5.2.1stampede2.tacc.xsede.orgSupernodal LU factorization2018-12-17T10:25:31Z
supernova2.0.0bridges.psc.xsede.orgA software package for de novo assembly from 10X Genomics Chromium Linked-Reads that are made from a single whole-genome library from an individual DNA source.2018-12-17T10:32:46Z
swift0.96.2supermic.cct-lsu.xsede.org2018-12-17T10:31:47Z
swig3.0.12stampede2.tacc.xsede.orgSWIG is a software development tool that connects programs written in C and C++ with a variety of high-level programming languages.2018-12-17T10:25:31Z
swig3.0.8bridges.psc.xsede.org2018-12-17T10:32:46Z
swr17.0wrangler.tacc.xsede.org2018-12-17T10:19:24Z
swr17.2.8stampede2.tacc.xsede.org2018-12-17T10:25:31Z
swr18.0.2stampede2.tacc.xsede.org2018-12-17T10:25:31Z
swr18.1.4stampede2.tacc.xsede.org2018-12-17T10:25:31Z
szip2.1bridges.psc.xsede.org2018-12-17T10:32:46Z
tacc-singularity2.5.1wrangler.tacc.xsede.orgApplication and environment virtualization2018-12-17T10:19:24Z
tacc-singularity2.6.0stampede2.tacc.xsede.orgApplication and environment virtualization2018-12-17T10:25:31Z
tacc_tips0.5stampede2.tacc.xsede.orgTips generated at each login.2018-12-17T10:25:31Z
tacc_tips0.5wrangler.tacc.xsede.orgTips generated at each login.2018-12-17T10:19:24Z
tau2.23comet-gpu.sdsc.xsede.orgtau2018-12-17T10:01:02Z
tau2.23comet.sdsc.xsede.orgtau2018-12-17T10:01:02Z
tau2.26.2p1stampede2.tacc.xsede.orgFramework for Application profiling and optimization2018-12-17T10:25:31Z
tau2.26.2p1_intelbridges.psc.xsede.org2018-12-17T10:32:46Z
tensorflow0.10.0bridges.psc.xsede.org2018-12-17T10:32:46Z
tensorflow0.10.0_nogpubridges.psc.xsede.org2018-12-17T10:32:46Z
tensorflow0.11.0bridges.psc.xsede.org2018-12-17T10:32:46Z
tensorflow0.11.0_nogpubridges.psc.xsede.org2018-12-17T10:32:46Z
tensorflow0.12.1bridges.psc.xsede.org2018-12-17T10:32:46Z
tensorflow0.12.1_nogpubridges.psc.xsede.org2018-12-17T10:32:46Z
tensorflow0.7.1bridges.psc.xsede.org2018-12-17T10:32:46Z
tensorflow0.7.1_nogpubridges.psc.xsede.org2018-12-17T10:32:46Z
tensorflow0.8.0bridges.psc.xsede.org2018-12-17T10:32:46Z
tensorflow0.8.0_nogpubridges.psc.xsede.org2018-12-17T10:32:46Z
tensorflow0.9.0bridges.psc.xsede.org2018-12-17T10:32:46Z
tensorflow0.9.0_nogpubridges.psc.xsede.org2018-12-17T10:32:46Z
tensorflow1.0.1bridges.psc.xsede.org2018-12-17T10:32:46Z
tensorflow1.0.1_anacondabridges.psc.xsede.org2018-12-17T10:32:46Z
tensorflow1.0.1_anaconda_nogpubridges.psc.xsede.org2018-12-17T10:32:46Z
tensorflow1.0.1_nogpubridges.psc.xsede.org2018-12-17T10:32:46Z
tensorflow1.1.0bridges.psc.xsede.org2018-12-17T10:32:46Z
tensorflow1.1.0_nogpubridges.psc.xsede.org2018-12-17T10:32:46Z
tensorflow1.4_gpubridges.psc.xsede.org2018-12-17T10:32:46Z
tensorflow1.5_gpubridges.psc.xsede.org2018-12-17T10:32:46Z
tensorflow1.7_py2_gpubridges.psc.xsede.org2018-12-17T10:32:46Z
tensorflow1.7_py2_nogpubridges.psc.xsede.org2018-12-17T10:32:46Z
tensorflow1.7_py3_gpubridges.psc.xsede.org2018-12-17T10:32:46Z
tensorflow1.8_py3_gpubridges.psc.xsede.org2018-12-17T10:32:46Z
texlive2017stampede2.tacc.xsede.org2018-12-17T10:25:31Z
tginfo1.1.1wrangler.tacc.xsede.orgTeraGrid Usage utility2018-12-17T10:19:24Z
tginfo1.1.3wrangler.tacc.xsede.orgTeraGrid Usage utility2018-12-17T10:19:24Z
tginfo1.1.4supermic.cct-lsu.xsede.orgTeraGrid tgusage utility2018-12-17T10:31:47Z
tgproxy0.9.1wrangler.tacc.xsede.orgTeraGrid Proxy utility2018-12-17T10:19:24Z
tgresid2.3.4wrangler.tacc.xsede.orgTeraGrid Resid utility2018-12-17T10:19:24Z
tgusage3.0supermic.cct-lsu.xsede.orgTeraGrid tgusage utility2018-12-17T10:31:47Z
theano0.8.0bridges.psc.xsede.org2018-12-17T10:32:46Z
theano0.8.2bridges.psc.xsede.org2018-12-17T10:32:46Z
tiff4.0.6bridges.psc.xsede.org2018-12-17T10:32:46Z
tmhmm2.0cbridges.psc.xsede.org2018-12-17T10:32:46Z
tmux2.7bridges.psc.xsede.org2018-12-17T10:32:46Z
tophat2.0.12supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
tophat2.1.0bridges.psc.xsede.orgA splice junction mapper for RNA-Seq reads2018-12-17T10:32:46Z
tophat2.1.1bridges.psc.xsede.orgA splice junction mapper for RNA-Seq reads2018-12-17T10:32:46Z
tophat2.1.1comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
tophat2.1.1comet.sdsc.xsede.org2018-12-17T10:01:02Z
tophat2.1.1stampede2.tacc.xsede.orgFast splice junction mapper for RNA-Seq reads2018-12-17T10:25:31Z
torch5633c24ebridges.psc.xsede.org2018-12-17T10:32:46Z
totalview8.12.1supermic.cct-lsu.xsede.org2018-12-17T10:31:47Z
transabyss2.0.1bridges.psc.xsede.orgDe novo assembly of RNAseq data using ABySS2018-12-17T10:32:46Z
transdecoder3.0.1bridges.psc.xsede.orgTransDecoder identifies candidate coding regions within transcript sequences.2018-12-17T10:32:46Z
transrate1.0.3bridges.psc.xsede.orgSoftware for de-novo transcriptome assembly quality analysis.2018-12-17T10:32:46Z
trilinos11.12.1comet-gpu.sdsc.xsede.orgtrilinos2018-12-17T10:01:02Z
trilinos11.12.1comet-gpu.sdsc.xsede.orgtrilinos2018-12-17T10:01:02Z
trilinos11.12.1comet.sdsc.xsede.orgtrilinos2018-12-17T10:01:02Z
trilinos11.12.1comet.sdsc.xsede.orgtrilinos2018-12-17T10:01:02Z
trilinos12.10.1stampede2.tacc.xsede.orgPortable Extendible Toolkit for Scientific Computing, Numerical library for sparse linear algebra2018-12-17T10:25:31Z
trilinosgit20180209stampede2.tacc.xsede.orgPortable Extendible Toolkit for Scientific Computing, Numerical library for sparse linear algebra2018-12-17T10:25:31Z
trim_galore0.4.4stampede2.tacc.xsede.orgConsistent quality and adapter trimming for RRBS or standard FastQ files2018-12-17T10:25:31Z
trim_galore0.4.5bridges.psc.xsede.orgA wrapper tool around Cutadapt and FastQC to consistently apply quality and adapter trimming to FastQ files.2018-12-17T10:32:46Z
trimmomatic0.35comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
trimmomatic0.35comet.sdsc.xsede.org2018-12-17T10:01:02Z
trimmomatic0.36bridges.psc.xsede.org2018-12-17T10:32:46Z
trinity2.0.6bridges.psc.xsede.org2018-12-17T10:32:46Z
trinity2.1.1bridges.psc.xsede.org2018-12-17T10:32:46Z
trinity2.1.1comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
trinity2.1.1comet.sdsc.xsede.org2018-12-17T10:01:02Z
trinity2.2.0bridges.psc.xsede.org2018-12-17T10:32:46Z
trinity2.3.2bridges.psc.xsede.org2018-12-17T10:32:46Z
trinity2.4.0bridges.psc.xsede.org2018-12-17T10:32:46Z
trinity2.8.4bridges.psc.xsede.org2018-12-17T10:32:46Z
trinityrnaseq2.5.1wrangler.tacc.xsede.orgDe novo RNA-Seq Assembler2018-12-17T10:19:24Z
trinotate2.0.2bridges.psc.xsede.org2018-12-17T10:32:46Z
trinotate3.1.1bridges.psc.xsede.org2018-12-17T10:32:46Z
trinotate_db2.0bridges.psc.xsede.org2018-12-17T10:32:46Z
trinotate_db2.0_pylon1bridges.psc.xsede.org2018-12-17T10:32:46Z
trnascan-se1.23bridges.psc.xsede.orgScan a sequence file for tRNAs using tRNAscan, EufindtRNA and tRNA covariance models2018-12-17T10:32:46Z
uberftp2.6supermic.cct-lsu.xsede.orgInteractive GridFTP client2018-12-17T10:31:47Z
uberftp2.8bridges.psc.xsede.orgUberFTP GridFTP client2018-12-17T10:32:46Z
uberftp2.8stampede2.tacc.xsede.orgTeraGrid Uberftp utility2018-12-17T10:25:31Z
uberftp2.8wrangler.tacc.xsede.orgTeraGrid Uberftp utility2018-12-17T10:19:24Z
udunits2.2.25stampede2.tacc.xsede.orgI/O library which stores and retrieves data in self-describing, machine-independent datasets.2018-12-17T10:25:31Z
ufraw0.22bridges.psc.xsede.org2018-12-17T10:32:46Z
umfpack5.7.1stampede2.tacc.xsede.orgNumerical library for sparse solvers2018-12-17T10:25:31Z
umfpack5.7.1-complexstampede2.tacc.xsede.orgNumerical library for sparse solvers2018-12-17T10:25:31Z
umfpack5.7.1-complexdebugstampede2.tacc.xsede.orgNumerical library for sparse solvers2018-12-17T10:25:31Z
umfpack5.7.1-cxxstampede2.tacc.xsede.orgNumerical library for sparse solvers2018-12-17T10:25:31Z
umfpack5.7.1-cxxcomplexstampede2.tacc.xsede.orgNumerical library for sparse solvers2018-12-17T10:25:31Z
umfpack5.7.1-cxxcomplexdebugstampede2.tacc.xsede.orgNumerical library for sparse solvers2018-12-17T10:25:31Z
umfpack5.7.1-cxxdebugstampede2.tacc.xsede.orgNumerical library for sparse solvers2018-12-17T10:25:31Z
umfpack5.7.1-debugstampede2.tacc.xsede.orgNumerical library for sparse solvers2018-12-17T10:25:31Z
unceqr2016-07-08bridges.psc.xsede.org2018-12-17T10:32:46Z
unicore6.6.0supermic.cct-lsu.xsede.org2018-12-17T10:31:47Z
valgrind3.12.0stampede2.tacc.xsede.orgDynamic memory testing and debugging tools2018-12-17T10:25:31Z
varscan2.4.2bridges.psc.xsede.org2018-12-17T10:32:46Z
vasp4.6comet-gpu.sdsc.xsede.orgvasp2018-12-17T10:01:02Z
vasp4.6comet.sdsc.xsede.orgvasp2018-12-17T10:01:02Z
vasp5.4.4comet-gpu.sdsc.xsede.orgvasp2018-12-17T10:01:02Z
vasp5.4.4comet.sdsc.xsede.orgvasp2018-12-17T10:01:02Z
vasp5.4.4stampede2.tacc.xsede.orgVienna Ab-Initio Simulation Package2018-12-17T10:25:31Z
vasp6bstampede2.tacc.xsede.orgVienna Ab-Initio Simulation Package2018-12-17T10:25:31Z
vaspvaspbridges.psc.xsede.org2018-12-17T10:32:46Z
vcftools0.1.14comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
vcftools0.1.14comet.sdsc.xsede.org2018-12-17T10:01:02Z
vcftools0.1.15bridges.psc.xsede.orgVCFtools is a program package designed for working with VCF files, such as those generated by the 1000 Genomes Project.2018-12-17T10:32:46Z
vcftools0.1.17bridges.psc.xsede.orgVCFtools is a program package designed for working with VCF files, such as those generated by the 1000 Genomes Project.2018-12-17T10:32:46Z
velvet1.2.10comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
velvet1.2.10comet.sdsc.xsede.org2018-12-17T10:01:02Z
velvet1.2.10wrangler.tacc.xsede.orgVelvet - Sequence assembler for very short reads2018-12-17T10:19:24Z
velvet1.2.10-maxk191-categ4-bigbridges.psc.xsede.org2018-12-17T10:32:46Z
velvet1.2.10-maxk63-bigbridges.psc.xsede.org2018-12-17T10:32:46Z
velvet1.2.10-maxk63-categ14-bigbridges.psc.xsede.org2018-12-17T10:32:46Z
visit2.12.0stampede2.tacc.xsede.orga parallel visualization suite based in part on VTK2018-12-17T10:25:31Z
visit2.12.3bridges.psc.xsede.org2018-12-17T10:32:46Z
visit2.13.0bridges.psc.xsede.org2018-12-17T10:32:46Z
visit2.9.1comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
visit2.9.1comet.sdsc.xsede.org2018-12-17T10:01:02Z
vmatch2.2.2supermic.cct-lsu.xsede.org2018-12-17T10:31:47Z
vmd1.9.2bridges.psc.xsede.org2018-12-17T10:32:46Z
vmd1.9.3comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
vmd1.9.3comet.sdsc.xsede.org2018-12-17T10:01:02Z
vmd1.9.3stampede2.tacc.xsede.org2018-12-17T10:25:31Z
vtune17.update4stampede2.tacc.xsede.orgIntel VTune Amplifier2018-12-17T10:25:31Z
vtune18.0.2stampede2.tacc.xsede.orgIntel VTune Amplifier2018-12-17T10:25:31Z
vtune2015.3.0supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
vtune2016.3.0bridges.psc.xsede.org2018-12-17T10:32:46Z
vtune2017.3.0bridges.psc.xsede.org2018-12-17T10:32:46Z
vtune2017.4.0bridges.psc.xsede.org2018-12-17T10:32:46Z
weaver2017-11-17bridges.psc.xsede.orgAllele-Specific Quantification of Structural Variations in Cancer Genomes2018-12-17T10:32:46Z
weka3.7.12comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
weka3.7.12comet.sdsc.xsede.org2018-12-17T10:01:02Z
westpa15acf5d3bridges.psc.xsede.org2018-12-17T10:32:46Z
wgs8.2bridges.psc.xsede.org2018-12-17T10:32:46Z
wgs8.3rc2bridges.psc.xsede.org2018-12-17T10:32:46Z
wq264supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
wq272supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
wranglerirods4wrangler.tacc.xsede.orgirods2018-12-17T10:19:24Z
xalt2.4stampede2.tacc.xsede.orgCollects system usage data2018-12-17T10:25:31Z
xdinfo1.3-1stampede2.tacc.xsede.org2018-12-17T10:25:31Z
xdinfo1.3-1supermic.cct-lsu.xsede.org2018-12-17T10:31:47Z
xdinfo1.3-1wrangler.tacc.xsede.org2018-12-17T10:19:24Z
xdinfo1.3-2bridges.psc.xsede.orgXSEDE xdinfo client2018-12-17T10:32:46Z
xdresourceid1.0comet-gpu.sdsc.xsede.org2018-12-17T10:01:02Z
xdresourceid1.0comet.sdsc.xsede.org2018-12-17T10:01:02Z
xdresourceid1.0stampede2.tacc.xsede.org2018-12-17T10:25:31Z
xdresourceid1.0supermic.cct-lsu.xsede.org2018-12-17T10:31:47Z
xdresourceid1.0wrangler.tacc.xsede.org2018-12-17T10:19:24Z
xdresourceid1.0-2bridges.psc.xsede.orgXSEDE Resource ID client2018-12-17T10:32:46Z
xdusage1.1-2supermic.cct-lsu.xsede.org2018-12-17T10:31:47Z
xdusage2.0stampede2.tacc.xsede.orgXSede Usage utility2018-12-17T10:25:31Z
xdusage2.0wrangler.tacc.xsede.orgXSede Usage utility2018-12-17T10:19:24Z
xdusage2.0-3supermic.cct-lsu.xsede.org2018-12-17T10:31:47Z
xdusage2.0-4bridges.psc.xsede.orgXSEDE xdusage client2018-12-17T10:32:46Z
xdusage2.1stampede2.tacc.xsede.orgXSede Usage utility2018-12-17T10:25:31Z
xdusage2.1wrangler.tacc.xsede.orgXSede Usage utility2018-12-17T10:19:24Z
xdusage2.1-1bridges.psc.xsede.orgXSEDE xdusage client2018-12-17T10:32:46Z
xhmm1.0bridges.psc.xsede.orgxhmm uses principal component analysis (PCA) normalization and a hidden Markov model (HMM) to detect and genotype copy number variation (CNV) from normalized read-depth data from targeted sequencing experiments.2018-12-17T10:32:46Z
xsede1.0supermic.cct-lsu.xsede.org2018-12-17T10:31:47Z
xsede1.1supermic.cct-lsu.xsede.org2018-12-17T10:31:47Z
zlib1.2.11bridges.psc.xsede.org2018-12-17T10:32:46Z
zlib1.2.11supermic.cct-lsu.xsede.org2018-12-17T10:31:46Z
zlib1.2.8bridges.psc.xsede.org2018-12-17T10:32:46Z
zlib1.2.8stampede2.tacc.xsede.orgA Massively Spiffy Yet Delicately Unobtrusive Compression Library2018-12-17T10:25:31Z
zoltan3.83bridges.psc.xsede.org2018-12-17T10:32:46Z
zoltan3.83stampede2.tacc.xsede.orgNumerical library for sparse solvers2018-12-17T10:25:31Z
zoltan3.83-complexstampede2.tacc.xsede.orgNumerical library for sparse solvers2018-12-17T10:25:31Z
zoltan3.83-complexdebugstampede2.tacc.xsede.orgNumerical library for sparse solvers2018-12-17T10:25:31Z
zoltan3.83-cxxstampede2.tacc.xsede.orgNumerical library for sparse solvers2018-12-17T10:25:31Z
zoltan3.83-cxxcomplexstampede2.tacc.xsede.orgNumerical library for sparse solvers2018-12-17T10:25:31Z
zoltan3.83-cxxcomplexdebugstampede2.tacc.xsede.orgNumerical library for sparse solvers2018-12-17T10:25:31Z
zoltan3.83-cxxdebugstampede2.tacc.xsede.orgNumerical library for sparse solvers2018-12-17T10:25:31Z
zoltan3.83-debugstampede2.tacc.xsede.orgNumerical library for sparse solvers2018-12-17T10:25:31Z